Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07634 ATGGATAGGATTCAAGAAGCAGATGAAAATGGCAAATGTTCAGTTATTGGTTTAGCAATCAAAGGTAACAAGAAAAGCAAGTATGTTGTACAATGGGCACTTGATAAGTTTGTTGCTGAAGGAGTGCTTATCTTCAAGCTTATACATGTTAGGGCTGTTATCAAAGGAGTTCCAACACCAATGGGAGATGTGCTTCCTCTTTCACAAGTGCGGAACGATGTAGCAATGGCTTTCAAAAGGGAAATCGAGTGGCAAACTAATCATATGCTTCTTCCTTTTAAGAGCTTGTGCGAGCAAAGAAAGGTGCATGTAGACGTTGTAGTTATTGAATCAGATGATGTAGTAACTGCGGTAGCAGAGGAAGTAACTAAGGACGCTTTAACCAAACTTGTCGTTGGAGCTTCGTCTTCTGGTATTTTTAGAAGTAAACATAAGGGTATGTCTGCGAGAATCTCAGTATGCACTCCAACATTTTGTACGGTTTACGCTGTTTCAAAGGGAAAATTGTCCATACGGCAATCAGACACGCAGATTGACGGAAGTATTACCGATAACATGAGTGAAGTCAGTTTTTCCTCGAGCGACTCATCGAACTTTACTTCCACCACTCAGACAGATTCTGCCTCGGTTGCATCATATGCTGCCTTACACCCCTCTCCTCTTGCAACACGACGGCTTAAAGCTCTCTCGGGTATAGAACAAACTCTCCCGAATTTAAATCTAACTAATCATTCACGAGGCCAGTCTCTAGATCTAGCGAGAACGAATGCAGCTACAAGTTCTTCTAAAAACTCGGATATTGATCATGCGGTAAGTCAGGTCTCTAGTTCCGGAAGCATTTCAGATACGGAATCTTGCTTTTATGATCAAAAGTTTGGAGCACAAGTTACTAAATCGCTATCGCCAAATAGACAGGAAAACCTTAACCTTGAGCTGCAAAAGTTGAGAATTGAACTAAGACATGCACAGGGAATGCATGCAGTAGCTCAAAGTGAGAACACCGATGCATCACAAATGTTGAATGAATTAAACAAGAGAAGATTAGAAGAATCCATGAAAATGAAGGAGATTATTGCCAAGGAAGAGATGGCGAAGGAATTAGCGAATCAAGAAAGAGATAAATACGAAGCTGCGGCTAGAGAGGCTGAATATCTGAAACAATGTGCTGAACGAGAAGCTGCTGAACGAAAGGGAACAGAGTTGAAAGCTATCTATGCTGCCAAAGAGAAAGAAAAACTCGAGGATGCTCTGAGTGGCTTCACGCCTCAGTACCGAGTGTTTACGTGGGATGAAATAGTTTCAGCTACTTCGTCTTTCTCGGAAAAACTGAGAATCGGAATGGGAGCATATGGAATGGTGTTCAAGTGCACTTTGCATCATACAACTGTTGCGGTTAAAGTTATCAACTCGAATGGAATCCGCAAAAGCAAGCAATTCGAACAAGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGCGCATGTCCTGATCACGGATGTCTTGTGTATGAATATATGGAAAATGGCAACTTGGAAGATAAACTACTCCAGAAAAACGGTAATAGCCAAATCCCGTGGTTTGTTAGGTTTCGAATAGCTTGGGAAATCGCGTCAGCTCTTTCCTTTCTTCACAGCACAAAGCCACAACCTATCATTCATCGTGACTTGAAACCGGCAAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGCGATGTTGGTCTTTCTACAATCCTTGATTCAGATAACTTATCTGCCATGTATAAGGACACAGCACCTGTTGGAACACTCAGCTACATTGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACGAAATCCGATGTTTATGCTTTTGGATTAGTAATGTTACAGTTGTTGACAGCAAAACCTGCCATAGCACTTACTCACATAGTTGAAACAGCTATTGATGATGGTAATTTAGCAGATATATTGGATCCAAAAGCAGGATCATGGCCACTACAAGAGACACTGGACATAGCTCGGTTAGCATTGAGCTGTGCAGAGATGCGGCGTAAGGATCGACCTGATTTGAATGATCACGTGCTTCCAATACTAGAGAGGTTGAAAGAAGTAGCTGATAAGGCTCAACATTCTGCTTCAATAGTTACTATAAAATCCAGACCTCCCAACCATTTTATATGTCCTATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCAGACGGATATACATACGATCGCAAAGCAATTGAAAAGTGGCTTGAAAATCACGACAAATCACCGATGACAAATATGGCTTTACCTCATAAGTATCTAATTCCTAATTACACACTTTTATCAGCAATTTTGGAGTGGAAGACCTAA 2373 0.4121 MDRIQEADENGKCSVIGLAIKGNKKSKYVVQWALDKFVAEGVLIFKLIHVRAVIKGVPTPMGDVLPLSQVRNDVAMAFKREIEWQTNHMLLPFKSLCEQRKVHVDVVVIESDDVVTAVAEEVTKDALTKLVVGASSSGIFRSKHKGMSARISVCTPTFCTVYAVSKGKLSIRQSDTQIDGSITDNMSEVSFSSSDSSNFTSTTQTDSASVASYAALHPSPLATRRLKALSGIEQTLPNLNLTNHSRGQSLDLARTNAATSSSKNSDIDHAVSQVSSSGSISDTESCFYDQKFGAQVTKSLSPNRQENLNLELQKLRIELRHAQGMHAVAQSENTDASQMLNELNKRRLEESMKMKEIIAKEEMAKELANQERDKYEAAAREAEYLKQCAEREAAERKGTELKAIYAAKEKEKLEDALSGFTPQYRVFTWDEIVSATSSFSEKLRIGMGAYGMVFKCTLHHTTVAVKVINSNGIRKSKQFEQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDKLLQKNGNSQIPWFVRFRIAWEIASALSFLHSTKPQPIIHRDLKPANILLGGNLVSKIGDVGLSTILDSDNLSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPAIALTHIVETAIDDGNLADILDPKAGSWPLQETLDIARLALSCAEMRRKDRPDLNDHVLPILERLKEVADKAQHSASIVTIKSRPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLENHDKSPMTNMALPHKYLIPNYTLLSAILEWKT 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07634 790 Pfam Protein tyrosine and serine/threonine kinase 444 694 IPR001245 GO:0004672|GO:0006468
Vivi3g07634 790 Gene3D Transferase(Phosphotransferase) domain 1 512 722 - -
Vivi3g07634 790 SUPERFAMILY RING/U-box 721 789 - -
Vivi3g07634 790 CDD STK_N 15 167 - -
Vivi3g07634 790 Gene3D HUPs 9 146 IPR014729 -
Vivi3g07634 790 SMART Ubox_2 726 788 IPR003613 GO:0004842|GO:0016567
Vivi3g07634 790 SUPERFAMILY Protein kinase-like (PK-like) 420 694 IPR011009 -
Vivi3g07634 790 CDD RING-Ubox_WDSUB1-like 724 778 - -
Vivi3g07634 790 PANTHER OS02G0152300 PROTEIN 18 786 - -
Vivi3g07634 790 ProSiteProfiles U-box domain profile. 722 790 IPR003613 GO:0004842|GO:0016567
Vivi3g07634 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Vivi3g07634 790 Pfam U-box domain 724 789 IPR003613 GO:0004842|GO:0016567
Vivi3g07634 790 Coils Coil 305 346 - -
Vivi3g07634 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 790 IPR013083 -
Vivi3g07634 790 ProSitePatterns Protein kinases ATP-binding region signature. 445 466 IPR017441 GO:0005524
Vivi3g07634 790 SMART serkin_6 439 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07634 790 Coils Coil 358 392 - -
Vivi3g07634 790 Gene3D Phosphorylase Kinase; domain 1 418 511 - -
Vivi3g07634 790 ProSiteProfiles Protein kinase domain profile. 439 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07634 Vivi-Chr3 213017552 213022477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07634 15 790 U-box Gene Family AT4G25160 51.222 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi3g07634 PK_Tyr_Ser-Thr 6.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07634 - - gsj:114409387 1130.55