Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07620 ATGGCAATCATACACCAAGGAAACCATTCCATCTTGAAACTTTGTTGTTCATCAAACCGTGCAATAACCTTAATACAAAAGGTTATAGCAGAAGTCATTGGAACATATTTTCTTGTATTTGCAGGTTGTGGTGTTGTAGCAGTGGACAAAATCTATGGCTCCGTAACATTTCCAGGGATATGCATCACATGGGGTTTGGTTGTAACAGTCATGTGTTACTCAGTTGGTCATATCTCTGGAGGACTCTTCAACCCCGCGGTTACGATAACCTGGGCCATCTTTCGCCGAATCAAATTCATCGAAGCTCCACTTTACATCGCTGCTGAGTTACTCGGCTCGACACTTGCGAGCTTAACATTGTCTTTAATGTTTGATATTACACCGAAGTCTTTTTTCGGAACTGTGCCAGTTGGATCGAGTGGCCAATCTTTGGCTATGGAATTCATTATCAGTTTTCTGTTAATGTTTGTTATTTCAGCTGTTACAACGGATCATAGAGCGGTGGATGATTCAGCGAGTATCGCAGTTGGAATGACGATAACGTTGAATCTATTTATAGCTGGACCTGTTTCCGGTGCATCAATGAATCCAGCAAGGAGTATTGGTCCTGCAATTGTGGTGCATATTTACAATGGTTTATGGATATATGTAGTTGGGCCTATTGTTGGAGCTGTAGCTGGAGCACTTGCTTATAACTTTCTCAGATCGGTGTACAAGCCGAGGGCGGAAATAGCAGCAGCGACGACTCCTTCGGAATTGACAAAGGATAATCCAAACTCAGAATTGATAGCAGAAGAACCATTGAGGAGTATAAGTATAAGTTGA 825 0.4206 MAIIHQGNHSILKLCCSSNRAITLIQKVIAEVIGTYFLVFAGCGVVAVDKIYGSVTFPGICITWGLVVTVMCYSVGHISGGLFNPAVTITWAIFRRIKFIEAPLYIAAELLGSTLASLTLSLMFDITPKSFFGTVPVGSSGQSLAMEFIISFLLMFVISAVTTDHRAVDDSASIAVGMTITLNLFIAGPVSGASMNPARSIGPAIVVHIYNGLWIYVVGPIVGAVAGALAYNFLRSVYKPRAEIAAATTPSELTKDNPNSELIAEEPLRSISIS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07620 274 Pfam Major intrinsic protein 21 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 NCBIfam MIP family channel protein 30 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 CDD MIP 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 SUPERFAMILY Aquaporin-like 23 241 IPR023271 -
Vivi3g07620 274 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g07620 274 PANTHER AQUAPORIN NIP2-1 16 239 IPR034294 -
Vivi3g07620 274 Gene3D Glycerol uptake facilitator protein. 5 244 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07620 Vivi-Chr3 212926077 212927222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07620 16 257 Major Intrinsic Protein MIP AT5G37820 62.449 9.88e-107 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07620 K09874 - gmx:100791338 335.495