Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07595 ATGGCTTTGAAGTTTATAGCTATTTCGGCGGTTTCGACAGTGTTAAGTTTTGTAGGTCTTCAGTTTTGCACAGATTTGTCGTTAGATAAGTTTAAATCAGATGGACTGGTTGGATGGAATTCAATTCACTTGGATAATGTCGACCAGGACGTTGAGTTGCCTTTGGGATTGTATACCACCATAGGGTTACTTACGAATTGCTTGATCAATGTATTTGTCCTTCTCAATCTTTGTCTCAAGGCTATGTTTTTCGCCGAGTTGTATCCTTCTGAATCTCGTAAATTGGTTGAACGTCTTGTTAATTATGTCATCTACAAGGGAACATTTCTTCCGTTGATTGTACCACCGACACTTTATCAGGCAGGTCTTTGGACAGCTTGGTTGGCCGTGCTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGATTAGAGCGGCTGAATGCATCACCATCCGCCACACCATGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTCTTAGTTGACGTTCTCTGGATACGGCTCTGTCTTTCAATATATACAACACATGAGTCGTCTATGTTTCTGTTACTGTTCTTTGAGCCTTTAAGTATTGCTTTCGAAACCCTACAGGCCATTTTAGTACATGGATTCCAGTTGCTTGACATATGGATTCATCATTCGGCTTGCAGTAGTAGTGATTTCCGACCACCTAAACTGCTTGACACATTAACTGCAGGTTCGTTATTGGAATGGAAGGGAGTTCTTATCCGGAACTTGGGTTTTTTCCTTGACATGGCAACGTTTCTCATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGACGCAGTGCTATTTTTAAATATACGTGCCTTGCTTAGTGCAATAATAAATCGTGTAAAAGGATTTATTAGGCTAAGGATAGCTCTAGGATCACTTCATGCAGCTCTTCCCGATGCAACCGCCGAGGAGCTAAGAGCATACGACGATGAATGTGCTATTTGTAGAGAATCAATGGCTAAGGCGAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCGTGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCGCTTTTTGCAGGCCGATCTGAAACTGAAACAAATTCAAGTACAGGGGTAATATCTAGTGACGAGCAACTTGCACGCCAAATGAGTGCAGGATTTGATCGTCAAAACTCTGCTAGACATAACATGCCAGCAGGATTGTTTCCAAATCAGACACCGAACAATGCCGAAGGCGCTCCTTGGAGGGGTGCAGGAATGGACTCAGGGTGGTTACATTCTTGGCCGAATCCGGGTGTTGATGGAGCTGGTCCATCTACCGCTATCAGAACAGTAGGTCTCGGAAGAGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAACCTATGCTCAGACCACCTTTGACGATTCTTCTTGGAACCTTTGGCCTATTAACCCATCTCAGGCTTCCGCGAGTGCTCCAACTCCGACGACCCTTCCTTCCCCTGGTGTAAGATTGCCCGGAGGAAATGGTGGTTTACATATAAGAACCAATTCACGACCCACAAATGATAACGTAGCAAACGTACTTGCTATGGCCGAGACCGTCCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTACAGGACTTGCAGCGGACGAATTCTGTCACGGTTACTGTGAATAATCTTCTCCAAATGTGA 1770 0.4373 MALKFIAISAVSTVLSFVGLQFCTDLSLDKFKSDGLVGWNSIHLDNVDQDVELPLGLYTTIGLLTNCLINVFVLLNLCLKAMFFAELYPSESRKLVERLVNYVIYKGTFLPLIVPPTLYQAGLWTAWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLSIYTTHESSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSSSDFRPPKLLDTLTAGSLLEWKGVLIRNLGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRVKGFIRLRIALGSLHAALPDATAEELRAYDDECAICRESMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRSETETNSSTGVISSDEQLARQMSAGFDRQNSARHNMPAGLFPNQTPNNAEGAPWRGAGMDSGWLHSWPNPGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTTFDDSSWNLWPINPSQASASAPTPTTLPSPGVRLPGGNGGLHIRTNSRPTNDNVANVLAMAETVREVLPHIPDDMILQDLQRTNSVTVTVNNLLQM 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07595 589 ProSiteProfiles CUE domain profile. 549 589 IPR003892 GO:0043130
Vivi3g07595 589 Pfam CUE domain 553 589 IPR003892 GO:0043130
Vivi3g07595 589 Pfam Ring finger domain 336 380 IPR001841 -
Vivi3g07595 589 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 10 589 - -
Vivi3g07595 589 Gene3D - 548 588 - -
Vivi3g07595 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 390 IPR013083 -
Vivi3g07595 589 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Vivi3g07595 589 SMART ring_2 338 379 IPR001841 -
Vivi3g07595 589 SUPERFAMILY RING/U-box 326 387 - -
Vivi3g07595 589 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Vivi3g07595 589 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07595 Vivi-Chr3 211968153 211973049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07595 57 422 C3H Transcription Factor Family AT3G16090 28.109 2.00e-30 123