Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07560 ATGGCCAATATTCTTCCTATCAAATTTCTTGTTATTTCCAATATAGTTTTATTATTGTTCTTCTCTCAATTATCCACCGCAATTGATACTATCACCCAATTTCAATCTCTTGATGATGGAAACACCTTGGTTTCTAGTGATGGAACTTTTGAGTTAGGATTTTTCAGACCAGGTAGTTCCACAAATCGCTATGTTGGAATATGGTACAAAAACATCTCAAATAGAAGAATAGTTTGGGTTGCAAACCGTGATAATCCAATCAAAGACGACAATTCCAACTCAACCATGTTGACCATTAACAAGGAAGGAAACCTTGTACTACTTACCAACAACAATAAAACTCTTGTTTGGTCAACAAACATCACAACACAATCTTTGTCTTCTACAAGTTCACATGTGGCTCAACTATTAGATAATGGAAATTTTGTAATCAAAGACAACAATAAGAAATTTCTATGGCAAGGTTTTGATTTTCCTTGTGATACTTTGTTGCCGGATATGAAGCTTGGTTGGAACTTAGAAACCGGTCACAATCGTCGATTAACTTCGTGGAAAAATTGGGATGATCCGTCTTCGGGAAACTTAACTTGGAGTATTGTCCTTAGTAGTAACCCGGAAGTTATATTAAAAAAAGGGTCAACTGAATTTCACAGGAGTGGTCCTTGGAATGGAATTGGGTTTAGTGGAGCGCCCGCATTAAGTGTAGCTCAAAATGTTGAACCAAAATTAGTGAACAATTCAAATGAAGTTTACTTCACATATAGTCTTGTGAGCAAGAGTAAGCTTTTAATAATTTATCTGAACCAAACAATTGGTTTTCGCGAACGCATTGTATGGACTACAGAAGAAAATGTTTGGAAGATTTTTGAGCAGGTGCCCAGGGGAGATGGTTGTGATATTTATAATTCTTGTGGATCTTATGGAAATTGTAATCCTATTAAGTCTCCAGTTTGTGAGTGTTTAGATGGGTTTAAGCCCAAATCGTCACAAAATTTGGACACATATAATTGGACACAAGGTTGTGCGCGCAAAATTCAACCCATATTTAAATGCATGGTGGGAGATGGTTTTACAAAATTTTCTGGATTGAAATTACCGGAGACAACACATACTTGGGTTGATGCTAAAATGAAACTAGAGGATTGCAAGAAAAAATGCTTAAAAGATTGTTCTTGTACAGCTTATTCAAACTTGGATGTTAGAGGAGATGGCAGTGGTTGTTGTTTATGGTTTGGTGATCTTATTGATTTGAGACACGTTTCATCAATTAATCCAGATCTGTATGTTCGAGTGAATGCTTCTTCAATAGTTTCTGGTGGACATAAGAAAAGTCATACTTTGACAATTGCAATCACTATTCCGTTGGTCATTGTTTTCCTGCTTGTGACCATAGTCTTCTACATTTACAAGAGAAAAAGAAAGCAAAGAGATCCAACTCAAAAGAAACTTTTAGATTGGTCTAAGCGCTTTAACATCATATGTGGAATTGCTCGTGGACTTCTTTACCTTCATCAAGATTCTAGATTGAGGATCATACATAGAGATCTAAAACCAAGTAATATTTTGTTAGATAGTGATATGAATCCAAAGATTTCTGATTTTGGCTTGGCAAAAATTTGTGGTGATGATCAAGTTGAAGGAAATACAAACAGAGTAGTCGGGACACATGGTTACATGGCTCCTGAATATGCCATTGATGGACTATTCTCCATAAAATCTGATGTATTTAGCTTTGGCATTTTGTTGCTAGAGATTGTAAGTGGAAAGAAAAATAAAAGACTTACATATCCAAGCAGCAATCATAGTCTTGTAGGACATGCTTGGAGGTTGTGGAAAGAGGGAATCTCAGAAGAATTGATTGATGATTGTGTTGGGGACTCATTTATTCTATCTGAAGCCTTACGTTCCATACAAGTTGGTCTTTTGTGTCTACAATATCATCCAAATAATAGACCTAATATGGCATCGGTGCTTGCAATGTTAACAAATGAAATAGTTTTATCTCAACCAAAGGAACCTGGCTTCATTAAAGAAAGGGCCTCCACAGAGGGAAATTCTACAACCGAAAATTTAATTTCTTCTTCAATCAATGAAGTCACTATTTCATTATTGGATGTTAGATGA 2124 0.3578 MANILPIKFLVISNIVLLLFFSQLSTAIDTITQFQSLDDGNTLVSSDGTFELGFFRPGSSTNRYVGIWYKNISNRRIVWVANRDNPIKDDNSNSTMLTINKEGNLVLLTNNNKTLVWSTNITTQSLSSTSSHVAQLLDNGNFVIKDNNKKFLWQGFDFPCDTLLPDMKLGWNLETGHNRRLTSWKNWDDPSSGNLTWSIVLSSNPEVILKKGSTEFHRSGPWNGIGFSGAPALSVAQNVEPKLVNNSNEVYFTYSLVSKSKLLIIYLNQTIGFRERIVWTTEENVWKIFEQVPRGDGCDIYNSCGSYGNCNPIKSPVCECLDGFKPKSSQNLDTYNWTQGCARKIQPIFKCMVGDGFTKFSGLKLPETTHTWVDAKMKLEDCKKKCLKDCSCTAYSNLDVRGDGSGCCLWFGDLIDLRHVSSINPDLYVRVNASSIVSGGHKKSHTLTIAITIPLVIVFLLVTIVFYIYKRKRKQRDPTQKKLLDWSKRFNIICGIARGLLYLHQDSRLRIIHRDLKPSNILLDSDMNPKISDFGLAKICGDDQVEGNTNRVVGTHGYMAPEYAIDGLFSIKSDVFSFGILLLEIVSGKKNKRLTYPSSNHSLVGHAWRLWKEGISEELIDDCVGDSFILSEALRSIQVGLLCLQYHPNNRPNMASVLAMLTNEIVLSQPKEPGFIKERASTEGNSTTENLISSSINEVTISLLDVR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07560 707 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 156 - -
Vivi3g07560 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Vivi3g07560 707 Gene3D Transferase(Phosphotransferase) domain 1 468 672 - -
Vivi3g07560 707 CDD B_lectin 35 159 IPR001480 -
Vivi3g07560 707 Pfam Protein kinase domain 480 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07560 707 Pfam PAN-like domain 351 417 IPR003609 -
Vivi3g07560 707 CDD PAN_AP_plant 352 431 - -
Vivi3g07560 707 SMART serkin_6 395 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07560 707 Pfam D-mannose binding lectin 77 185 IPR001480 -
Vivi3g07560 707 Gene3D - 22 155 IPR036426 -
Vivi3g07560 707 PIRSF SRK 1 482 IPR024171 GO:0004674
Vivi3g07560 707 PIRSF SRK 476 707 IPR024171 GO:0004674
Vivi3g07560 707 ProSiteProfiles EGF-like domain profile. 294 330 IPR000742 -
Vivi3g07560 707 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 190 IPR036426 -
Vivi3g07560 707 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 350 431 - -
Vivi3g07560 707 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 669 - -
Vivi3g07560 707 SMART blect_4 34 159 IPR001480 -
Vivi3g07560 707 SUPERFAMILY Protein kinase-like (PK-like) 479 669 IPR011009 -
Vivi3g07560 707 ProSiteProfiles PAN/Apple domain profile. 351 432 IPR003609 -
Vivi3g07560 707 Gene3D Hepatocyte Growth Factor 349 429 - -
Vivi3g07560 707 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Vivi3g07560 707 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 472 - -
Vivi3g07560 707 ProSiteProfiles Bulb-type lectin domain profile. 28 157 IPR001480 -
Vivi3g07560 707 ProSiteProfiles Protein kinase domain profile. 395 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07560 707 SMART ntp_6 352 431 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07560 Vivi-Chr3 209046256 209050342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07560 477 707 Receptor kinase-like Gene Family AT4G23150 52.743 1.24e-76 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi3g07560 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07560 - - vvo:131657236 1404.42