Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07506 AATGCGACTTGTGGAAAAACAACTTATGTTCACTGTAAAGCTGGGCGTGGAAGGAGTACAACAATTGTGCTTTGTTATTTGGTTGAATACAAGCACATGACTCCTACTGCTGCCCTGGAGTATGTGCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCTCAGGGGAAGGCTGTTCAAAGTTATAACAATCTAAGACCTTCTCCTTTATCACAGACTGTTCAAAGTTATAACAATCAAAGACCTTCTCCTTCTGGAGACATAGTTCTCATAACCCAAGATGATCTTGAAGGCTATCATAGTACATCTGATACAAGTATGGAGCTAGCTATTATTCCTAAAGTGCCAAAGACTAAGCCCATGATAGCACGGTTATCCGAGTTCTCTAACCAGCTTTAA 399 0.416 NATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPTAALEYVRSRRPRVLLAPSQGKAVQSYNNLRPSPLSQTVQSYNNQRPSPSGDIVLITQDDLEGYHSTSDTSMELAIIPKVPKTKPMIARLSEFSNQL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07506 132 Pfam Dual specificity phosphatase, catalytic domain 5 58 IPR000340 GO:0008138|GO:0016311
Vivi3g07506 132 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 1 57 IPR000387 GO:0016311|GO:0016791
Vivi3g07506 132 Gene3D Protein tyrosine phosphatase superfamily 1 66 IPR029021 -
Vivi3g07506 132 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 64 IPR029021 -
Vivi3g07506 132 FunFam Protein-tyrosine phosphatase 1 79 - -
Vivi3g07506 132 ProSitePatterns Tyrosine specific protein phosphatases active site. 10 20 IPR016130 GO:0016311|GO:0016791
Vivi3g07506 132 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 127 - -
Vivi3g07506 132 MobiDBLite consensus disorder prediction 61 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07506 Vivi-Chr3 207870495 207872787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07506 1 89 Protein tyrosine phosphatase (PTP) family AT5G56610 61.798 1.93e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07506 - - vvo:131659831 267.7