Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07439 ATGGATTCAGGTTCGCCGTATCAGTGGCTGAGAGAACTAAGGCGTGACTCTCAGAGCTCGAATCCGGTAAGTCTTCTTATTGAGTGTGCTAAATGTGTTGCGTCGGGAAGCATAAAACATGCCGATATAGGACTTGAGTATATTTCTCAGGTATCCTCTCCTGATGGTAATGCTGTGCAAAGAATGGTAACTTATTTTAGTAAAGCACTTGGATACAAGATAGTCAAACAATTACCGGGTGTCTACAAAGCGCTGAATTCCTCGAAAACTTCTTTGTCTTCGGACGATATCCATGCTCAGAAATACTTCTACGAACTGTGTCCCTTTTTGAAGTTTTCTTACCTGATCACAAATCAAGCGATTGTTGAAAAAATGGAATTCGAAAAAGTGGTTCATATAATTGATCTTCATTGTTCCGAGCCAGCGCAATGGATAAATCTTATTCAAACTTTGAAGAAACGTCAAGGAGGTCCGCCTCATCTGAAAATTACAGGAATTCATGAAAACAAAGAGGTACTTGACCAAATGAGTTTTCATTTAACAACTGAAGCAGGAAATTTGGATTTTCCTTTACAGTTTAATCCAATAGTTAGCAGACTCGAAGATGTTGATTTCGAAAACTTGCCTGTCAAGACAGGAGAGGCTGTTGCGATTACTTCTGCTCTTCAGCTGCATTCTCTCCTCGCAATCGATGATGAAATGGTTGGGAAGATCTCGCCAGCAGGACCATCGTCTATCAATATGCAGAGAGCAGTACAGATGGGTCAGAGAACTTTCGCAGATTGGCTCGAACGAGATATGATCAATGCATATATCTTGAGTCCCGATTCAGCTTTATCGCCTCTCTTTTTAGGTGCTTCGCCTAAAATGGGAATTTTTCTTAACGCTATGCGAAAACTACAACCGAAACTTCTAGTGATTACCGAACAGGAATCGAATCTAAACGGATGTAATTTAATGGAGAGAATCGACCGAGCACTGTATTTTTACAGTTCACTTTTCGACTGCTTGGACTCGACTGTTACGAGAACATCAGTCGAGAGACAGAAACTCGAGAGCATGCTTCTCGGAGAGCAAATAAAGAACATCATTACTTGTGAAGGAGCTGATAGAAAGGAGAGGCACGAAAAGGTTGAGAAATGGATTAGAAGGCTAGAAATGGCCGGATTTGCAAAGGTACCTCTGAGTAACAACGGGAGGATCGAAGCGACAAATCTATTGCAGCGATATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTGCTTGTCTGTTGGAGTGATAGACCACTCTTTTCTGTATCAGCATGGAGTTTTAGGAGATAA 1329 0.4078 MDSGSPYQWLRELRRDSQSSNPVSLLIECAKCVASGSIKHADIGLEYISQVSSPDGNAVQRMVTYFSKALGYKIVKQLPGVYKALNSSKTSLSSDDIHAQKYFYELCPFLKFSYLITNQAIVEKMEFEKVVHIIDLHCSEPAQWINLIQTLKKRQGGPPHLKITGIHENKEVLDQMSFHLTTEAGNLDFPLQFNPIVSRLEDVDFENLPVKTGEAVAITSALQLHSLLAIDDEMVGKISPAGPSSINMQRAVQMGQRTFADWLERDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLQPKLLVITEQESNLNGCNLMERIDRALYFYSSLFDCLDSTVTRTSVERQKLESMLLGEQIKNIITCEGADRKERHEKVEKWIRRLEMAGFAKVPLSNNGRIEATNLLQRYSHKYKFKEENDCLLVCWSDRPLFSVSAWSFRR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07439 442 ProSiteProfiles GRAS family profile. 13 439 IPR005202 -
Vivi3g07439 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 435 IPR005202 -
Vivi3g07439 442 Pfam GRAS domain family 23 438 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07439 Vivi-Chr3 206130834 206132475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07439 1 442 GRAS Transcription Factor Family AT1G50420 48.667 3.04e-151 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi3g07439 GRAS 1e-118 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07439 - - gmx:100779726 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g07439 3 206130834 206132475 Vivi3g07439 3 206130834 206132475 ECH