Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07407 ATGGCAGAACTTGTTGCTGGAGCATGCCTTTCGTCTTTCTTTCAAATGATTTTTGATAAGTTGGCTTCAAGTAATTTCACTGACTATTTCCGTAGAGGCAAGCTTGAAAAGTTGGTGGAGGAACTTGAGTCAACCCTTGATTCTATCAACCAAGTGTTGGATGATGCAGAGATTAAACAATACCAAATCCGAAATGTCAAGAAGTGGCTTGGTGATGTTAAACATGCTATGTATGAGGCTGACCAACTCTTGGATGAGATTGCCACTGATGCACTATTGAAGAAGATAAGAGCTGAATCTCAACCTACTACCAGTAGGAACAACTATTTTGGTTATGTTTCAACTTTTATTAATCCATTTGAATCTCGAGTCAAAGAATTGCTAAAGAATCTAAAGCATCTTGCTGAGCAAAAAGATGTGCTGGAATTGAAAAATGGATCTTTGACTCGTAATGAAGTTGGAGTCAGCTCGAAACCTTTAGAAAGACCGCAAACTTCCTATTTGGTGGATGCATCCCGCATATATGGTAGAGATGATGAGAAAGATGAAATGATCAAATTTTTACTTTCAAACAATGGCAGTGACAATCAAACACCTGTGTCTAGCATAGTTGGTCTGGGTGGGATTGGCAAGACCACCTTTGCTAAGCTTGTGTACAATGACAGTAGGATTGAGAATCATTTTGAACATAAAGCATGGGTTTATGTTTCTGAATCTTTTGATGTTGTTGAACTCACCAAAGCTATTCTCAAGTCATTTCATTCTCCGGCAGATGATGATGAATCTATTCTCAATTTACTTCAACAGAGACTACAACGCGTACTAACGGGCAAAAAATACTTGCTTGTTTTAGATGATATATGGAACGCGAATGCGGATTGTTGGGAGCAGTTACTACTTCCTTTTAACCATGGATCTTACGGAAGTAAGATTATAGTGACAACACGTGACAAGGAGGTAGCAAATGTTTTGAAATCCACCAAGTTACTTGATCTACAGAAATTGGGGAAAAGCGATTGTTGGAGTTTATTTGCAACACATGCGTTTCATGGCAAAAATGTGTGTGAAAATCCAAACCTTGAATCAATTGGCAAAAGAATTGTGGAAAAGTGTGGAGGATTGCCTTTAGCTGTAAAAACAATGGGCCAACTGTTGCGAAAAAAATTCTCTCAGCATGAATGGATGAAGATATTGGAGACTGATATGTGGCGTTTATCCGATGGGGACAACAACATTAACCCAGTGCTGAGATTGAGTTACCATAATCTACCTTCCAATCATAAACGTTGTTTTGCTTATTGTTCTATATTTCCTAAAGGTTATTGGTTTAGAAAAGACGATTTAATCAGGATTTGGATGGCAGAAGGTTTGCTTAAGTGTTGTAGAACAGAAAAAAGTGAAGAAGAGTTGGGTAATGAAATTTTTGGTGATCTAGAGTCAATTTCATTTTTCCAACAATCAGCCTACTATGACTCTGACATGCATGACCTTGTTAATGATTTGGCTGAATCAGTGTCAGGAGAATATTGTATGCGAATAAACGAAGCTAAGGTGGAAGGTATCCCTGGAAGAACACGTCACATTAGATGGTCTCTTCAATCAAATTTTGTTGACAAATTACTAGAGCCAATTTGTGAGCTTAAGGGCCTACGTAGTCTTTTATTAGAAGGCGACTTTGGTATATTGATAAGCAGCAATGTGCAACGTGATATGTTTTCAAGACTAAAATATTTGCGAATATTATCATTATTTTTTTGCGGCATCTCAGAGCTAATTGATGAGATAAGCAATTTAAAGCTTTTGCGTTATCTAGATCTTTCTATTAATAGAATTTCAAGGTTACCTGACACCATTTGTATGCTATATAATTTGCAAACACTCTTGTTGGATGAATGTAATGAATTGACTGAGCTCCCTTCAAATTTTTACAAACTCATCAATTTACGCCACCTTGAACTTCCCGGTTCTATAAAGAAGATACCAAAGAATATAGGAAGTCTAAGCAATCTCCAGACCTTAAATTCTTTTATAGTGGAAGAGCAGAACGGATCAGATCTTAAGGAGTTGGAGAAACTAAACCATCTTCGTGGAACAATTTATATTAAAGGGTTGGGTAAAGTCATAGATCATACAAATGTTACAACAAGAAGTTTGAAAGATAAGATGTATTTGGAAGAAATAGGGATGATATTTGATGGCGGAAGAGAAGATGTGGATGGATCAATAGTTGAAAGCAATATGTCTTTGTTGGAGGCTCTTCAACCAAATAGTAACTTGAAGATACTCACCATCAGCATGTACAGAGGTAATAGCTTTCCTAATTGGCTAAGTGGTTGTCATTTACTCAAGAAGCTTTATATTTCAGACTGTCATGGAATAAAGATCATCGGAAAAGAGTTTTCCAGCCATAACTTCAAGTCTCTTGAAATTTTGGGCTTTGAGAATATGGACAATTTGGAGGAATGGTTATGTATTGATGGGTTTCCTTTACTTACAGAGCTTTCTATAACAAATTGTCCCAAATTGAAAAGGGTATCACTGCCTCAACACCTTCCTTCATTACAGAAATTGGAGATTGGGGATTGCAAAATGCTGGCCGTATCAATTCCCATTTGTGATAATATCAAAAAGTTAAAAATAAAGAGATGTGGTCGGATTTTGATAAATGAGTTGTCATCCAGCTTGAAAAGGTTCAGAGTTGATGAAAATCAGTATGTTGAGTTCCCCATGGGTCATTTAATCAATAATCCCAATCTGGAATTAATAGAGTTGGATTTCAAGGACTTTGTAGAATGTCCTTCTTTGAATTTGTGTTGTTATAATTCTCTTTGGGGATTTTCAATAACAGGATGGAAGTCCTCCTCCTTGCCTTTTTCACCACACTTGTTCACCAATCTTAAATATCTAGGGCTGTCTAATTGTCCAGAATTAGAATGTTTTCCTATGGGAGGTTTCCCTTCCAACTTGACCAATCTTAAAATAGTTAATTGTCCTAAATTGAAAGCTTCGAGAGAGGACTGGGGTTGTCTCCACCACAAATCTAATGTTTATATTATTATTCACAATTGCCCTAGTCTTGAGCACTTGCCAGAGGAGTGGGGTTCCATTTTTGATTTGGAGATTGAAGATTGTCCATTACTTAAGGAGAAGTACCAAAAGGAGGGAGGAGAACGTTGGCATACAATTAGTCACATCTATGAAGTGAGGATTGACGGTTTTGAGCAGCCTTCTTTTATTTCGGAAAAGGAAATGAGTGACAGTGACAAGTCTATGTAA 3276 0.37 MAELVAGACLSSFFQMIFDKLASSNFTDYFRRGKLEKLVEELESTLDSINQVLDDAEIKQYQIRNVKKWLGDVKHAMYEADQLLDEIATDALLKKIRAESQPTTSRNNYFGYVSTFINPFESRVKELLKNLKHLAEQKDVLELKNGSLTRNEVGVSSKPLERPQTSYLVDASRIYGRDDEKDEMIKFLLSNNGSDNQTPVSSIVGLGGIGKTTFAKLVYNDSRIENHFEHKAWVYVSESFDVVELTKAILKSFHSPADDDESILNLLQQRLQRVLTGKKYLLVLDDIWNANADCWEQLLLPFNHGSYGSKIIVTTRDKEVANVLKSTKLLDLQKLGKSDCWSLFATHAFHGKNVCENPNLESIGKRIVEKCGGLPLAVKTMGQLLRKKFSQHEWMKILETDMWRLSDGDNNINPVLRLSYHNLPSNHKRCFAYCSIFPKGYWFRKDDLIRIWMAEGLLKCCRTEKSEEELGNEIFGDLESISFFQQSAYYDSDMHDLVNDLAESVSGEYCMRINEAKVEGIPGRTRHIRWSLQSNFVDKLLEPICELKGLRSLLLEGDFGILISSNVQRDMFSRLKYLRILSLFFCGISELIDEISNLKLLRYLDLSINRISRLPDTICMLYNLQTLLLDECNELTELPSNFYKLINLRHLELPGSIKKIPKNIGSLSNLQTLNSFIVEEQNGSDLKELEKLNHLRGTIYIKGLGKVIDHTNVTTRSLKDKMYLEEIGMIFDGGREDVDGSIVESNMSLLEALQPNSNLKILTISMYRGNSFPNWLSGCHLLKKLYISDCHGIKIIGKEFSSHNFKSLEILGFENMDNLEEWLCIDGFPLLTELSITNCPKLKRVSLPQHLPSLQKLEIGDCKMLAVSIPICDNIKKLKIKRCGRILINELSSSLKRFRVDENQYVEFPMGHLINNPNLELIELDFKDFVECPSLNLCCYNSLWGFSITGWKSSSLPFSPHLFTNLKYLGLSNCPELECFPMGGFPSNLTNLKIVNCPKLKASREDWGCLHHKSNVYIIIHNCPSLEHLPEEWGSIFDLEIEDCPLLKEKYQKEGGERWHTISHIYEVRIDGFEQPSFISEKEMSDSDKSM 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07407 1091 Gene3D Ribonuclease Inhibitor 523 681 IPR032675 -
Vivi3g07407 1091 PANTHER DISEASE RESISTANCE PROTEIN RP 36 997 IPR044974 GO:0006952
Vivi3g07407 1091 Gene3D Ribonuclease Inhibitor 885 1052 IPR032675 -
Vivi3g07407 1091 FunFam Probable disease resistance protein At1g61300 157 328 - -
Vivi3g07407 1091 Coils Coil 32 59 - -
Vivi3g07407 1091 Coils Coil 124 151 - -
Vivi3g07407 1091 SUPERFAMILY L domain-like 494 878 - -
Vivi3g07407 1091 Gene3D - 420 504 IPR036388 -
Vivi3g07407 1091 Gene3D - 334 419 IPR042197 -
Vivi3g07407 1091 ProSiteProfiles Leucine-rich repeat profile. 600 621 IPR001611 GO:0005515
Vivi3g07407 1091 PRINTS Disease resistance protein signature 200 215 - -
Vivi3g07407 1091 PRINTS Disease resistance protein signature 274 288 - -
Vivi3g07407 1091 PRINTS Disease resistance protein signature 371 385 - -
Vivi3g07407 1091 PRINTS Disease resistance protein signature 849 865 - -
Vivi3g07407 1091 Pfam NB-ARC domain 178 421 IPR002182 GO:0043531
Vivi3g07407 1091 Gene3D - 162 330 IPR027417 -
Vivi3g07407 1091 Gene3D Ribonuclease Inhibitor 682 884 IPR032675 -
Vivi3g07407 1091 Pfam Rx N-terminal domain 10 99 IPR041118 -
Vivi3g07407 1091 Gene3D - 14 139 - -
Vivi3g07407 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 434 IPR027417 -
Vivi3g07407 1091 SUPERFAMILY RNI-like 805 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07407 Vivi-Chr3 205044036 205065760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07407 203 388 WRKY Transcription Factor Family AT5G45050 27.749 9.08e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07407 - - vvo:131659801 1295.8