Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07392 ATGTTAAAGAAGAAGTCTAGCTTAGGGAGACAAAAAATTCCTATTGAAAAAATACCAAAAAAAAGTCATTTACAAGTTACTTTCTCTAAACGCCGTTCTGGGCTATTCAAAAAAGCTAGTGAACTTTGCACTCTCTGTGGCGTTGAAATTGCAATGGTAGTTTTCTCTCCAGCTGACAAGGCATTTTCATTTGGTCATCCAGAAGTCGAGTCTATCGTTGATCGTTATGTGACTCGCAATCCTCCACCAGAATCCAGTGCTCTCCAACTTGTTGAGGCTCATAGAAATGCTAATGTTCGCGATCTCAACATTCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAAGAGATAGAGCAAGCAAGGAAAGTTAGGCAAAGCCAATTTTGGTGGGAGAGTCCAATTGATGAGCTTGCCTTGAATGAATTGGTTCAATTAAAGGGATCTATTGAGGAGTTGAAGAAGAACATGGGGAAATTTGCTAACAAATGCATCATAGAACAATCTAACGCATCTTCATCAAACATGGGAGTTAATGGATTTGGACGTTATGATTCATTTGACAACAAATTTGGGCTTGGAATCAATCTTGTTCCCACATATCCTAATGTCTATCTTGGTTTTCGAAATGGGTATCTTTGA 657 0.3836 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAMVVFSPADKAFSFGHPEVESIVDRYVTRNPPPESSALQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEQARKVRQSQFWWESPIDELALNELVQLKGSIEELKKNMGKFANKCIIEQSNASSSNMGVNGFGRYDSFDNKFGLGINLVPTYPNVYLGFRNGYL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07392 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vivi3g07392 218 Coils Coil 99 119 - -
Vivi3g07392 218 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vivi3g07392 218 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vivi3g07392 218 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vivi3g07392 218 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Vivi3g07392 218 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Vivi3g07392 218 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vivi3g07392 218 Gene3D - 87 183 - -
Vivi3g07392 218 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Vivi3g07392 218 PANTHER MADS BOX PROTEIN 10 163 - -
Vivi3g07392 218 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vivi3g07392 218 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vivi3g07392 218 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07392 Vivi-Chr3 204665353 204666009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07392 5 160 Type I MADS-box Gene Family AT5G60440 56.604 6.73e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g07392 SRF-TF 5.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07392 - - tpra:123905348 313.538