LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g07364	ATGTCATTGTCTTGTTCTTTCACATGTGATGATTGGATTTATGATGTCTTTCTCAGTTTTAGAGGCATTGATACTCGAAACAACTTCGCTAGTAATCTCTACAATTCTCTTCATCAAAAAGGTATAAACACTTTCTTTGATGAAGATAAAATTCATAAGGGAGATGAACTCACACCCACTCTTCTCCAAGCCATTAAACAATCTAGGATTTTCATTGCTATTTTCTCTAACAACTATGCATTTTCAACTTTTTGTTTGACTGAACTTGTCACCATCATTGATTGCTCCAAGTCACATGGAAGGTTGTTTTTGCCGGTTTTTTATGATGTCGATCCATCTCAAATTCGACACATAACTGGCACTTATGCTGAGGCTTTCGCGAAACATGAGGCGAGGTTTAGAGATGAGAAGGAAAAGGTGCAGAAATGGAGGGATGCTTTACATCAAGCTGCTAACATGTCTGGATGGCATTTCAAACCAGGGTCTGAACCAGAATATAAATTTATTGCAAAAATCGTTGAAAAGGTCTCTAAAAAGATCCACCGTATTCCTTTGCATGTTGCAAGCAAGCCTGTTGGGTTGGAGTCTCAAATGTTACAAGTTACATCTCTCCTTGACCTTGAATCTAATGAGAGAGTCAGCATGGTAGGCATTTATGGAATCGGCGGAATAGGAAAATCAACACTTGCTCGTGCTGTGCATAACTTGACTGCTGATCAATTTGAAAATGTGTGTTTTCTTGCTGACATAAGACAGCAGGAAGCTCATCATGGTCTTGCCCACCTCCAAGAAACACTACTTTCTGAAATACTTGGAGAGAAGGATATTAAAGTGGGAGATGTTTATAGAGGAATTTCAATAATTAAAAGGAGGCTCCAAAGAAAGAAAGTCCTTTTGATTCTTGACAATATTGACAAAGAGAAGCAGTTACAGGTACTTGTAGGAGATCATGATTGGTTTGGCTCCGGCAGCAAGATCATAATCACTACAAGAGACAAGCATTTGCTGGCCACTCATGGGATTGTCAAAGTGTATGAGGTCCAACAGCTAAACAATGAAAAGGCTCTTGAATTATTTAGTTGGCATGCATTTAAAAGTAAAGAAATGGATCCAAGTTATGTGGATACTGCACAACGTGCAGTATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAACTGTTTGGAAAAAGTTTAGCTGTATGGAAATCTTCATTAGATAAATATGAAAAAGTCATTTGTAAAGATATTCATGAAATTCTCAAAGTTAGCTATGATGATTTGGAAGAAGACGAGAAAGGCATTTTCCTAGACATAGCTTGTTTCTTCAATTCATATGAAATACGCTATGTCAAAGAAATACTATACTTGCATGGCTTTCATGCGGATGGTAGCATACAGGTGCTATTTGACAAATCTTTAATGAAAATTGATGCCAATGACTGTGTCAGAATGCATGACTTGATTCAAGATATGGGCAGAAAAATTGTGAGGCAGGAATCAACAGTGAAGCCTGGAAAACGCCGTAGATTATGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAAAACAAGGGAACCGATTCAATAGAAGTCATAATCTGCGACTTGCACAAAATCAAAGAAGTGAAATGGTGTGGAAAAGCCTTTGGCCAAATGAAGAACTTGAAAATTCTTATAATTAGAAATGGACGATTTTCCCAAGGTCCTCAAATTCTTCCAAATAGTTTGAAAGTTCTTGATTGGAGCGGATATCAATCATCCTCTTTACCATCCGAATTTAATCCCAAGAATCTTGCAATACTTAACCTGCCTGAAAGTTGCCTTAAACATATTGATTCACTCAAGGTGTTTGAGATGTTGAACTTTCTAGATTTTGAAGGCTGTGAGTTCCTAACCAAAATACCTACCTTATCTAGAGTACCGAATTTGGGGGCACTGTGTGTCGATTATTGCACAAATTTAAATAGAATTCATGACTCAGTTGGGTTTCTTAACAGGCTTGTGTTATTAAGTGCTCAAGGATGCAATCAACTAGAAATTCTGGTTCCTTGCATCAACTTGCCATCTTTAGAGACTTTAGATCTTAGAGGTTGCTCGTGTCTTGAAAGGTTCCCTGAAGTAGTTGGAGTAATGGAGAATATAAAAGAGGTTTATTTAGACCAGACTGCCATAAAACAATTGCCTTTTACATTTAGAAATCTTGTTGGACTCCAACGTTTGTTCTTGAGGAGATGCCAGAGGATGATCCAGCTACCAAGCTATAGATTTCCCAAATGTGAGATAATTACAGATTATGGTTGTAGAGGATTTCGATCATTCAAGGATGAAGAAAAAGTGAGCCCAATAGTGTTTGAAGATGCTATGCTTGTTCATAATGAATATGGACGGTCCTACCTTGATATGTATTCTTATTATACAACCTCCAACGATTTCATTGAAGTATGTGGTCCTCTGTGTGAATCAGAACTCACTAAATTTGGGAATTTAACGGGGAGCATGAAGTTTGGTAAGCTTAAAAAGAACAAATCATCAGTATGTTTTTGGTTCCGAAAAAAATTCCCCAGGATAGCTCTAAAGTGTTTTGTTGAATCTGAAAAGCATTTGGACAACATGGTGTTGAGTTTTGAGTTGAATGTACTCATCAATGGCACTAAGCAACTCACTTCCTCATGTGAATACATATTTTATACAACAAAAGCGACAGCACAAGCTCTTTGTTGTGATGTACAATGCAAATTGGAGGGTGTATTTTCAGAGAATGAGTGGAATCAGGTGGATATTTTATGTGAGTTGAAACATCTATTGCCATGTGATTTCAAAGGGGTGATGGCTTATCGGGATTGGACAGCTAAGAGGATTCTGAGGTGGTCTGTTTTGTCTGTCGTGTTAGAAAACAAAGAGGATGATTTGAGTTTAATTGACAATCCTAATTCTCCTATGTCAGCTGAAGAGAAATTTCGAGAGATACAAGAAATAAACAAAACACTTAAGAACGAATCACTGCGCAACATATGTAAAAAATGCATAAAACAAAGGGAATTCAACATATGTAAAAAATGCAAAAAAACAAAGGGAATCCGCTATTCCATATGCACGTTTTCGAAAATACCATCTCAACTAAATTATTATGAAAATTTTCTAATAATTTCGTAG	3168	0.3703	MSLSCSFTCDDWIYDVFLSFRGIDTRNNFASNLYNSLHQKGINTFFDEDKIHKGDELTPTLLQAIKQSRIFIAIFSNNYAFSTFCLTELVTIIDCSKSHGRLFLPVFYDVDPSQIRHITGTYAEAFAKHEARFRDEKEKVQKWRDALHQAANMSGWHFKPGSEPEYKFIAKIVEKVSKKIHRIPLHVASKPVGLESQMLQVTSLLDLESNERVSMVGIYGIGGIGKSTLARAVHNLTADQFENVCFLADIRQQEAHHGLAHLQETLLSEILGEKDIKVGDVYRGISIIKRRLQRKKVLLILDNIDKEKQLQVLVGDHDWFGSGSKIIITTRDKHLLATHGIVKVYEVQQLNNEKALELFSWHAFKSKEMDPSYVDTAQRAVSYCHGLPLALEVIGSQLFGKSLAVWKSSLDKYEKVICKDIHEILKVSYDDLEEDEKGIFLDIACFFNSYEIRYVKEILYLHGFHADGSIQVLFDKSLMKIDANDCVRMHDLIQDMGRKIVRQESTVKPGKRRRLWFSDDIVHVLEENKGTDSIEVIICDLHKIKEVKWCGKAFGQMKNLKILIIRNGRFSQGPQILPNSLKVLDWSGYQSSSLPSEFNPKNLAILNLPESCLKHIDSLKVFEMLNFLDFEGCEFLTKIPTLSRVPNLGALCVDYCTNLNRIHDSVGFLNRLVLLSAQGCNQLEILVPCINLPSLETLDLRGCSCLERFPEVVGVMENIKEVYLDQTAIKQLPFTFRNLVGLQRLFLRRCQRMIQLPSYRFPKCEIITDYGCRGFRSFKDEEKVSPIVFEDAMLVHNEYGRSYLDMYSYYTTSNDFIEVCGPLCESELTKFGNLTGSMKFGKLKKNKSSVCFWFRKKFPRIALKCFVESEKHLDNMVLSFELNVLINGTKQLTSSCEYIFYTTKATAQALCCDVQCKLEGVFSENEWNQVDILCELKHLLPCDFKGVMAYRDWTAKRILRWSVLSVVLENKEDDLSLIDNPNSPMSAEEKFREIQEINKTLKNESLRNICKKCIKQREFNICKKCKKTKGIRYSICTFSKIPSQLNYYENFLIIS	1055

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g07364	1055	Pfam	TIR domain	14	181	IPR000157	GO:0007165
	Vivi3g07364	1055	SUPERFAMILY	L domain-like	538	780	-	-
	Vivi3g07364	1055	Gene3D	Ribonuclease Inhibitor	521	780	IPR032675	-
	Vivi3g07364	1055	Gene3D	-	8	183	IPR035897	-
	Vivi3g07364	1055	Gene3D	-	349	433	IPR042197	-
	Vivi3g07364	1055	ProSiteProfiles	TIR domain profile.	12	180	IPR000157	GO:0007165
	Vivi3g07364	1055	FunFam	Disease resistance protein (TIR-NBS-LRR class)	10	182	-	-
	Vivi3g07364	1055	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	156	IPR035897	-
	Vivi3g07364	1055	PRINTS	Disease resistance protein signature	384	398	-	-
	Vivi3g07364	1055	PRINTS	Disease resistance protein signature	215	230	-	-
	Vivi3g07364	1055	PRINTS	Disease resistance protein signature	291	305	-	-
	Vivi3g07364	1055	PRINTS	Disease resistance protein signature	690	706	-	-
	Vivi3g07364	1055	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	759	IPR044974	GO:0006952
	Vivi3g07364	1055	Gene3D	-	184	344	IPR027417	-
	Vivi3g07364	1055	SMART	AAA_5	212	350	IPR003593	GO:0016887
	Vivi3g07364	1055	SUPERFAMILY	"Winged helix" DNA-binding domain	420	526	IPR036390	-
	Vivi3g07364	1055	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	443	IPR027417	-
	Vivi3g07364	1055	Pfam	NB-ARC domain	198	430	IPR002182	GO:0043531
	Vivi3g07364	1055	SMART	till_3	13	153	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g07364	Vivi-Chr3	204110664	204125868	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g07364	14	783	WRKY Transcription Factor Family	AT4G12020	31.704	3.45e-94	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g07364	-		-	vvo:131631893	1522.68