Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07297 ATGGAAAAGGAGGATTTTTCTGAGATGCTTTCAAGGATGGAAGTTTTGGTTGATGAGGTTGTTATTTTTGCTAAGAAATCTGAAATTGAGGTAGAGGCTTTTTCGGAGTTTGGAAACTTGGTTGAGAAACTATCACCAATCTTGAATGAATTGAGTGATAAAAGTATTGTTTTGGATAAGCCGTCGATAAGAAAATCGTTGGAATCTATTGAGAATGAGTTACGTCGTGCTAGAATTTTAACGAAAAGCTTGAATTTGAGACATCCGGTTAAGCAAATTGAGGATATGACGCATGATATTGGTCGGTCGTTAGGAGTTTTGCTTGTTGCGAGTCTTGAAGTGTCTATTGATTTTAGAGAACAGATTGGTGTATTGCAAAGACAGATGATGAATGCAAGATTTGATGGTGTTTGGAGTATGACTTCGAGTCCAAAATCGGAAATTTTCGCGAATGAAATGAAGACGGTTGGGGAAATAGAAGAGGAAATAATTGATGTGTCTATTGGTGATGTGGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTCGCGGTTTCGCTTCTGAGACTAAAGGAGTTCATGAGAAGTGAGAAATTGGACGGCGGGTTGATTAACGAGGAAGCAACTATTTCCATTCTTTTCAATCGGCTAAGTACGTGTAAGGCAGATAATAGGCTCGCCATAATTCAATTGCTAAGACGTATTGCTTTCGGAAATGACGAGAAAAAGGAGAAGATGGTTGAGGTTGAGTTTTTATCGGCAGTGGTGAAGTCTCTTACAAGGGATTCAGAAGAGAGAAGAGAAGCTGTAGGGTTGTTGCTAGACCTCTCTAACGTTCAAGCCGTTCGAAGGCGGATCGGAAGAATTCAAGGCTGTATTGTTATGTTGGTCGCCATTCTTAACAGTGATGACTCAGTTGCTTCACACGATGCCGCAAAGTTGTTAGATATTTTATCGAGTAATAATCAAAATGCACTTCATATGGCCGAGGCCGGTTACTTTAGGCCGCTAGTTCAGTATTTGAAGGAAGGCTCTGACATGAACAAAATCCTAATGGCGACGGCACTTTCTAGGTTGGAACTTACCGATAACAGCAAACTTACCCTCGGAGAAGATGGAGCGATCGAGCCACTTGTCAAAATGTTCGTCACTGGGAAACTCGAATCCAAGTTATCATCGCTAAACGCACTACAAAATCTATCTAGTTTGACCGAAAATGTGCAACGTTTAATTCAATCAGGAATTACAGGATCTTTGCTACAACTTCTTTTCTCGGTAACATCCGTGCTCATGACTCTAAGAGAGCCTGCATCAGCCATTCTTGCAAGAATCGCTCAGTCGGAATCCATACTCGTTAATGAAGATGTTGCTCAACAGATGCTTTCGCTTTTGAATCTTTCGAGCCCGATAATTCAGAGTCATCTATTAGAAGCTCTCAATAGCATGTCTTCGCATCTCGGCGCATCGAAAGTGAGAAGAAAAATGAAAGAAAAAGGTGCACTTCAACTACTCTTACCCTTTCTTAAAGAAAGTAACACCAAAATCAGGTGTAAGGTCTTGAATTTGCTATACACGCTCTCTAAAGATATAACCGACGAACTAACAGAATATCTCGACGAAACTCATCTTTTAGAAATTGTTAATATTGTCTCAACGTCCACGTCAGAGAGTGAAAAAGCCGCTGCGGTTGGCATCCTGAGTAACCTTCCTGCTAGCGATAAAAAAGTAACCGATATTCTAAAGCGTGCAAATCTGCTACCGATTTTGATATCAATTTTGTATTCTAGCAATGCAAGTAAATCACCATCAACAAATAGCTTAACCGAGAGCGCCACCGGTGTTATAAACCGCTTCACGAACTCATCCGACAAGAAACTACAACTCGTTTCAGTACAGCACGGGATAATCCCTTTGCTCGTAAAATTACTCTCAACCGGTTCACCGATCACGAAGTCAAGGGCTGCAAACTCCTTAACTCAACTATCACAAAACTCTCTTTCTCTAAGAAAATCTAGAAAATCAAGATGGTTATGCGTTCAACCTTCAAAAAACGCATATTGCGAAGTTCATGACGGATATTGCGTTGTCAATAGCACATTTTGTATAGTAAAAGCGGGTGCGGTTTCTCGACTTATCGAGATATTGGAAGATAAAGAGAAGGAAGTAGTTGAATCTTCTCTTGTTGCACTTTCAACTCTCTTGCAAGATGAAATATGGGAGAATGGTGTGAATTTCATTGCTAAATTATCAGGTGTGCAAGCTATTATAAAAAGCTTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCATTGTGGATGTTGGAGAGAGTATTTAAGATTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAAGTGGTGCTTATTGATTTGGCACAAAAAAGTGATTCTAGACTTAAGTCAACAGTTGCAAAAGTATTGGCTGAGCTAGAGCTTTTGCAAGATCAATCAAGTTACTTTTGA 2484 0.3969 MEKEDFSEMLSRMEVLVDEVVIFAKKSEIEVEAFSEFGNLVEKLSPILNELSDKSIVLDKPSIRKSLESIENELRRARILTKSLNLRHPVKQIEDMTHDIGRSLGVLLVASLEVSIDFREQIGVLQRQMMNARFDGVWSMTSSPKSEIFANEMKTVGEIEEEIIDVSIGDVVLQLKNGNDEEFAVSLLRLKEFMRSEKLDGGLINEEATISILFNRLSTCKADNRLAIIQLLRRIAFGNDEKKEKMVEVEFLSAVVKSLTRDSEERREAVGLLLDLSNVQAVRRRIGRIQGCIVMLVAILNSDDSVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDNSKLTLGEDGAIEPLVKMFVTGKLESKLSSLNALQNLSSLTENVQRLIQSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQSHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKESNTKIRCKVLNLLYTLSKDITDELTEYLDETHLLEIVNIVSTSTSESEKAAAVGILSNLPASDKKVTDILKRANLLPILISILYSSNASKSPSTNSLTESATGVINRFTNSSDKKLQLVSVQHGIIPLLVKLLSTGSPITKSRAANSLTQLSQNSLSLRKSRKSRWLCVQPSKNAYCEVHDGYCVVNSTFCIVKAGAVSRLIEILEDKEKEVVESSLVALSTLLQDEIWENGVNFIAKLSGVQAIIKSLEVGDAKVQEKALWMLERVFKIEEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQDQSSYF 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07297 827 Coils Coil 67 87 - -
Vivi3g07297 827 Gene3D - 487 676 IPR011989 -
Vivi3g07297 827 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 171 827 - -
Vivi3g07297 827 SMART arm_5 403 446 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 362 402 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 694 735 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 739 779 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 321 361 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 488 528 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 573 620 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 623 663 IPR000225 GO:0005515
Vivi3g07297 827 SMART arm_5 239 278 IPR000225 GO:0005515
Vivi3g07297 827 SUPERFAMILY ARM repeat 171 423 IPR016024 -
Vivi3g07297 827 SUPERFAMILY ARM repeat 337 782 IPR016024 -
Vivi3g07297 827 Gene3D - 692 825 IPR011989 -
Vivi3g07297 827 Gene3D - 192 323 IPR011989 -
Vivi3g07297 827 Gene3D - 324 486 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07297 Vivi-Chr3 202847727 202851598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07297 178 827 U-box Gene Family AT1G20780 27.843 4.73e-48 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07297 K08332 - gmx:100791453 1236.09