Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07293 ATGGAGCAACAACCAGACGCTTTTACTTCTTCCAACGGAATTCATACTTACGATGTTTTCCTCAGTTTCAGAGGAGAAGATACTCGCTACGGTTTCACCGGAAATCTCTACCAAGCTCTAAACCAGAAAGGAATCAAAACTTTCATGGACGATGAAGTCATTAAGAGAGGACAACAAATTTCACCAACCATTTTCAAAGCAATTCAACACTCTAGAATAGCTATAGTTGTTTTCTCTAAAACCTATGCATCCTCGAAATGGTGCCTTCAAGAACTCGTCAAAATCATTGCATGTTATAGAGACAATGGACTAGTGGTGATTCCGGTGTTTTACAAAGTGGATCCATCAGAGGTTCGAAATCATACCGGGAATTATGGACAGCAGTTGGCCATGCATGAGGAGAAAATGAAGGAGGAAGTGCGGAGTTGGAGGTTCGCTTTACGTGATGCTTCTAATCTGGCAGGATGGACTTTTGGAGATGGATATGAATATGAATACGAGTTTATCAAAAGGATCGTTGACACGGTGCACAACACATCAAAACAAAACCTTTCACATGTTGATGATCATGCAGTTGGACTTGAGATGCGCGTATCTAATATACTATTCCGTTTACAAATGCTTGATGCAACTGTTATCATGATAGGAATATGTGGGGTTGGTGGAATAGGAAAGACTACTTTGGCAAGAGCGGTGTATGACTCAATTGGCCAACAATTTGAGGGTCTTTGCTTCCTCCCTGATGTTAGAGGAAATTCAACCAAATATGGATTGGCATATCTACAACAGGTGATTGTTTATGATACGGTTGGCGAGAGTATCAAGCTGCATAATGAGAATGAAGGAATTTCAATCCTGATCAGAAAGTTGCAAAATAAAAGGATTCTTTTGATACTTGATGACGTTGACAAATTGGATCAATTGAAGAATTTAGCAGGAACACCTAGTTGGTTTGGTTGTGGAAGTAGGATTATCATAACTACTAGGCGTAAAGATATTCTAGCTGCTCATGGAGTTGGAAATATATATGATGTACCTGTATTTAATTTTCAGGAAGCTCTTGTATTTTTAAGTTCAATTGCATCAAAAAGACCTAATCCTGATGTAGAATGGGACCGCGCAATCAGCTATTCCCGCGGTCTTCCATTGGTCTTAAAGATTATCGGTTCTGATTTATTAGAAAAATCACCGGATGAATGGGAGATTTCATTAGGCAGATATGAAAAAGTCTGCAATGAAGAAACTCAGAGTATACTTGAAGTGAGTTATAATAGTTTGAATGAACTCGAGAAGAGAATTTTCACCGATATTGCATGTTTCTTTGCTGGAGAGCCTTTTTCATATGTCAAAAAAGTACTATCTGCATGTGGTTTCTTTACAAAAAATGGTATTAAGTCTATTGACAGACTTAAGAATAGATCCCTTATATCAATCACTCCCAGTGGAAGTTTGATGGTGCATGATCATATAATAGACATGGCTATGAATATAGTACAACAAGAATCACCCACGAATCCTTGCAAGCGAAGTAGGTTATGGCTACCTGAGGATGTTGTTCGAGTTTTAGACGAAACTGTGGAAAATGATAAAATCGAAGTCATGATATTGGACAACTTACCGCAAGGAAGTGTAGAGAAGTTGAGTGACAAAGCCTTCAAAGAGATGAAAAGCCTGAGAATACTAATTATTAAGGACGCGGTATATTCCGAAGTCCTCCAACATCTACCGGATAGCTTAAGAGTTCTGGATTGGAGCGGATATCCTTCATGCTGTTTGCCAACTGATTTTGTCAATTTGCCTTCTAGTTGTCTCATTTTCAACAAATTCAAGAATATGAAGAGTTTGATTAGTATTGATTTCACCGACTGTATATACATAACAGAAGTACCTGATATGTCTGGTATCGCAAACTTGGAGACATTGTATCTTGATAATTGTAAAAATGTTGCAAAAATTCATGATTCTGTTGGATTTCTTGATAACCTGATGGAGCTGACAGCCACAGGATGCACTAATCTAGAAACAATCCCTAAGGCATTCGAGTTGGCATCTCTTAAAGTTCTCTCTTTCTCCGAGTGTCCGAAACTTGTGAGGTTCCCAGAAATATTGTGCAAGATCGAAAATTTGCAACACATCAACTTGTGGCAAACTGGCATAAAGGAATTACCATTTTCTATTGGAAATGTGACAGGACTTGAAGTTTTAACTCTGATGGATTGTACTAGGCTTGATAAGCTACCTAGTAGCATTTTTACGCTACCAAGACTTCAAGAAATTCAAGCTGACTCGTGTAAAGGGTTCGGCATTTCTACTGAATGTGAAGATTATATTGGACCTGTGAAATTCAACGTGTCTCCAAACAAGATTCGTCTGTATTTGAGCTCTTGCAATTTAACAAATGAACATCTTTTTATCTGTCTCCGTGGTTTCGCCAACGTTGTACACATGGACCTGTCTTACAGTAACTTCACTGTCCTTCCACCGTGCATTAAAGAATGTATCAACTTGAACACTCTTCTGTTAACAAACTGCAATCAACTTCAAGAAATCTCAGTAATTCCACCAAATTTGATAGATATCGATGCAGTGAACTGCACATCATTGACATCTCAGTCACAAAGTGTACTATTAAGCCAAGCATTTCATGAAGCTGGAGAAAAAAGTGTAATGCTTCCAGGATCAAGTATACCAGAATGGTTCGATCATCGCAGCAGTGAAAGATCCATTTCCTTTTCCGCTCGTGAGAGATTCCCTAGTATTTGTGTGTGTGCTGTTTTTGGTGTGTTGGAAAAACTGCCTCATCATTTTCTAGTTAACGTCTGTTTAATCATCAACAGCCATAAAACAGTACTATCACAATGTTCTAGTCGGTCAATTGTAAAAGAACATGTGTGGATGTTTGATCTAAGAAATTTAATTGACCGTAGAGAAACATGGTTGGAACGCGGTTGGAATCATGTGGAAATTTCATGCGAAGATTGTCAAGATGAGCATTTGATGGCTGAAGCTGTTCATGGAGTTAGAAGAATGACAACTGTAAAATGGTATGGAATTCATGTGTATAGACAAGAAAACAACACAATGGAGAATGTCTTATTCACAAGTGCCAACACTCAACAAGAAAACAATATTAATGATGAAAGATTTAATGGAGACAGTTACCCTCTGTCTAAACGGCAGTGTAGATGA 3189 0.3823 MEQQPDAFTSSNGIHTYDVFLSFRGEDTRYGFTGNLYQALNQKGIKTFMDDEVIKRGQQISPTIFKAIQHSRIAIVVFSKTYASSKWCLQELVKIIACYRDNGLVVIPVFYKVDPSEVRNHTGNYGQQLAMHEEKMKEEVRSWRFALRDASNLAGWTFGDGYEYEYEFIKRIVDTVHNTSKQNLSHVDDHAVGLEMRVSNILFRLQMLDATVIMIGICGVGGIGKTTLARAVYDSIGQQFEGLCFLPDVRGNSTKYGLAYLQQVIVYDTVGESIKLHNENEGISILIRKLQNKRILLILDDVDKLDQLKNLAGTPSWFGCGSRIIITTRRKDILAAHGVGNIYDVPVFNFQEALVFLSSIASKRPNPDVEWDRAISYSRGLPLVLKIIGSDLLEKSPDEWEISLGRYEKVCNEETQSILEVSYNSLNELEKRIFTDIACFFAGEPFSYVKKVLSACGFFTKNGIKSIDRLKNRSLISITPSGSLMVHDHIIDMAMNIVQQESPTNPCKRSRLWLPEDVVRVLDETVENDKIEVMILDNLPQGSVEKLSDKAFKEMKSLRILIIKDAVYSEVLQHLPDSLRVLDWSGYPSCCLPTDFVNLPSSCLIFNKFKNMKSLISIDFTDCIYITEVPDMSGIANLETLYLDNCKNVAKIHDSVGFLDNLMELTATGCTNLETIPKAFELASLKVLSFSECPKLVRFPEILCKIENLQHINLWQTGIKELPFSIGNVTGLEVLTLMDCTRLDKLPSSIFTLPRLQEIQADSCKGFGISTECEDYIGPVKFNVSPNKIRLYLSSCNLTNEHLFICLRGFANVVHMDLSYSNFTVLPPCIKECINLNTLLLTNCNQLQEISVIPPNLIDIDAVNCTSLTSQSQSVLLSQAFHEAGEKSVMLPGSSIPEWFDHRSSERSISFSARERFPSICVCAVFGVLEKLPHHFLVNVCLIINSHKTVLSQCSSRSIVKEHVWMFDLRNLIDRRETWLERGWNHVEISCEDCQDEHLMAEAVHGVRRMTTVKWYGIHVYRQENNTMENVLFTSANTQQENNINDERFNGDSYPLSKRQCR 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07293 1062 MobiDBLite consensus disorder prediction 1043 1062 - -
Vivi3g07293 1062 Gene3D Ribonuclease Inhibitor 530 706 IPR032675 -
Vivi3g07293 1062 Gene3D - 348 433 IPR042197 -
Vivi3g07293 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 437 IPR027417 -
Vivi3g07293 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 156 IPR035897 -
Vivi3g07293 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 783 IPR044974 GO:0006952
Vivi3g07293 1062 PRINTS Disease resistance protein signature 378 392 - -
Vivi3g07293 1062 PRINTS Disease resistance protein signature 214 229 - -
Vivi3g07293 1062 PRINTS Disease resistance protein signature 289 303 - -
Vivi3g07293 1062 PRINTS Disease resistance protein signature 680 696 - -
Vivi3g07293 1062 SUPERFAMILY "Winged helix" DNA-binding domain 415 522 IPR036390 -
Vivi3g07293 1062 SUPERFAMILY L domain-like 542 876 - -
Vivi3g07293 1062 Gene3D - 11 176 IPR035897 -
Vivi3g07293 1062 Gene3D - 177 339 IPR027417 -
Vivi3g07293 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 182 - -
Vivi3g07293 1062 SMART till_3 16 153 IPR000157 GO:0007165
Vivi3g07293 1062 Pfam TIR domain 17 185 IPR000157 GO:0007165
Vivi3g07293 1062 Gene3D Ribonuclease Inhibitor 707 882 IPR032675 -
Vivi3g07293 1062 ProSiteProfiles TIR domain profile. 15 180 IPR000157 GO:0007165
Vivi3g07293 1062 Pfam NB-ARC domain 198 429 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07293 Vivi-Chr3 202734632 202739758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07293 8 856 WRKY Transcription Factor Family AT4G12020 27.784 3.33e-69 252