Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07259 ATGCTAGCAACAAACTCATCCCGTGTCAAGCTCAAAATTCATTGTCGTTTACCTTTTCTCATTACACTGATTCAATTTAAAACTGAATATTTAATTCAAATATTAAAAGGTTCAAGTTCAGGAGAACAACTTGGTGATGATGATGAATCTTCTATTTATGGAAGAGACGCTGATATTCAGAAACTTATACATCTTTTGTTTTCTAGTGATAGTGATGGTGATAGTAAAATTAGAGTGATTTCTATTGTCGGTATGGGAGGGATTGGTAAAACAGCCCTTGCTAAACACCTTTACAATCTTCCTCTAGTTAATGACAAATTTCAGTTAAAACTATGGGCAGATTTCTCAAGTGATGTTGATGATTTTAGTGTTTTTGAAAACATTCTTCAATCTATTACTTCACAAACAACCATTAACGATATGAATACCGTTTACCCAAATTTTTTGCTGGTATTGGATGGTGTGTGGGATGAAAGATTTGTCAATTGGACATTACTCATGGATATCTTGAATGTTGGGGAAACACAGAGTAGAATCATTGTCACAACACGAGATGAAAGAGTTGCAATATCCATGAAAACCTTTCTTTCTCTCCACTATTTGAGACCCTTGAAAGATGAAGATTGTTGGACTTTACTTGCCAAACATGCATTTGGAGAAAATGACTACCATCGACAACACTATCTAAACGAAACTGTTGCATATGAAAGAGAAGTGCGAGAAATAATTGGCAGGAAAATTGCAAAAAAGTGTGATGGTTTACCATTAGCTGCTGTAGAACACGGGGCTCTTCTTCCCACTTCATCATTGAAACCATATGAATGGTATTATGTGCTAGACAGTCATCTTCAGAAAACACCTTACAATGTGCTAGCCTCTCTCAAGTTGAGCTACTATTGCCTTTCTGATCCTTTAAAACTGTGTTTTCAATATTGTTCAAGTTTTCCGAAGAAGTCCATTTTAGAAAAAAAGATGGTAGTTCAGTTATGGATTGCAGCAGGGTTACTAGAATCATTGTCCATAAATCAAGAAAAAGTTGGAGAAGAATACTTTGATGAACTAGTTTCAAGGTCATTGATACATCGGCGGTCTATTGGTGATGAGGAAAGAAACTTTGGAATGCACAACTTCATCCATGATTTAGCTACGGAGGTTTCATCTCCACAGGTTTCTTCTTCATACTGTATCGATCTGGACAAACATAACCTAGATGACAGGATGCAAAATTTCTCATACAATAGAGGGACATATGATTCATATCACAAATTTGATAAATTATACAGAGTAAAAGGTTTGCGTACCTTTCTAGCATTCCCATTACAAGCACAATTGCCTCTTTGTTTGCTATCAAACAAGGTAGTGCATGACTTGCTGCCAACAATGAAACAATTACGCATGTTGTCTCTGTCAAGCTACAAGAATATCACCAAGGTTCCCAAGTCTATTGGAAATTTGTTAGACCTGCGATACTTAAATCTTTCTCACACTAGTATTGAAAGGCTGCCTTCTGAAACATGCAAGCTTTACCATCTGCAGTTCTTGTTGTTAGCAGGCTGTAAAAGGCTCACTGAATTGCCAGAGGACATGGGAAAATTGATTAATTTGCGCCACCTTGACGTTAGTAACACCGCATTGTGGGAGATGCCTGTACAAATAGCCAAACTAGAAAATCTCCACACTTTGTCTGACTTTGTTGTCAGCAAACACAATGGTGGATTAAATATCGCAGATCTAGGAAAACTTCCCCACCTACGTGGAAAACTTTCAATCTCACAGCTACAAAATGTTAATGACTCCTTTGAAGTAGATCAAGCCAATATAAAGATGAAAGAACAAATAAATGAGTTAGCTATGGAATGGGATTGTGGTAGTACTTATTTAGATTCACAGATTCAAAGTGTTGTACTTGAAAAGTTGCGACCCTCAACAAATTTGAAAAGTCTCACCATCAAAGGCTATGGTGGAATCAACTTTCCAAATTGGTTAGGTGATTTTTTATTTAGCAACATGGTGTGTTTAAGGATCTCGAATTGTAATGATTGTTTATGGCTTCCACCTCTTGGACAATTGGATAATTTGAAAGAACTCATTATTGAAGGGATGCAATCAGTGGAGACAATTGGTATTGAGTTCTATGGAAGTGTTGGCTCTTCATTTCAACCATTTCCCTCTTTGCAGATTCTACACTTTTTGAATATGCAAGAGTGGAAGGAATGGGACTTGATTGGAGGCACGACTACAACGTTTCCTAATCTAAAAACTTTATCACTAAGAAAGTGCCCAAAACTGATAGTCGGAAATATAACTGAAATTTTTTCATTCTTAACTGAACTTGAGTTAAGAGAATGTCCTTTATTGGTGCAATCAATTTCATTATCTGATCATGTATTTGGGCAACTGATGTTCCCTCTGTATTCTCTTCAACAGCTGACCATAGACGATTTTCCATCCCTGATGTCGTTCCCAACAGACGGTCTACCAAAAACCTTGAAACTTCTCATAATCAGTAACTGTGAGAATCTAGAATTCCTTCCTCATGATAACTTGCATAATTATACATCGCTTGAGGAATTGAAAATATCTCATAGCTGTAATTCAATGATATCATTTCCCTTAGGCACTCTCCCTGTCCTCAAAAGTCTGTTTATTGAAGGTTGTAAAAATCTGAAATCGATATTAATTGCAGAAGACGGGTCGGAAAAGAGTCTTTCATTTCTTAGAAGCATCAAAATATGGGATTGTAATGAATTGGATTCATTTCCCTCAGGTGGATTGAAAACTCCAAACCTTGTTTATATAGCACTGTGGAAGTGTGAGAAGCTTCCTTCACTGCCAGAAGCAATGAACAGTCTATCTGGCCTTCATGAAATGGAAATTGATAACTTACCAAATCTTCAATCTTTTGTCATAGATGAGTTACCTAGCAGTTTACGGAAACTGTCTGTTGGCTTTGTTGGTGGGATTAGGTGGAATACTGGGCCAACTTGGAAACATCTCACTTGTCTCTCGGAGTTGCGAATTAATGGCGATGATATGTTGAACACGCTGATGGGGCCATTGCTACCTAAAAAGCTTGTGAAATTGTGCATTTGTGGTCTTAATGATACAAGCATTGATGAGAAGTGGCTTCAGCATCTCGCTTATCTCGAACACCTTGAGATTATTAACGCTCCCAAACTCAAGTCGTTGCCAAAGAAAGGATTTCCTTCCTCTCTTTCAGTACTTAGTGTGACTCGCTGTCCATTACTGGAAACAAGTTTGCGGAAAAAGCGGTGGAAAAAATGGCGTAAGATTGCTCACGTTCCCTCCGTAGTTATTGATGAAGAATTGATCACATGA 3339 0.3744 MLATNSSRVKLKIHCRLPFLITLIQFKTEYLIQILKGSSSGEQLGDDDESSIYGRDADIQKLIHLLFSSDSDGDSKIRVISIVGMGGIGKTALAKHLYNLPLVNDKFQLKLWADFSSDVDDFSVFENILQSITSQTTINDMNTVYPNFLLVLDGVWDERFVNWTLLMDILNVGETQSRIIVTTRDERVAISMKTFLSLHYLRPLKDEDCWTLLAKHAFGENDYHRQHYLNETVAYEREVREIIGRKIAKKCDGLPLAAVEHGALLPTSSLKPYEWYYVLDSHLQKTPYNVLASLKLSYYCLSDPLKLCFQYCSSFPKKSILEKKMVVQLWIAAGLLESLSINQEKVGEEYFDELVSRSLIHRRSIGDEERNFGMHNFIHDLATEVSSPQVSSSYCIDLDKHNLDDRMQNFSYNRGTYDSYHKFDKLYRVKGLRTFLAFPLQAQLPLCLLSNKVVHDLLPTMKQLRMLSLSSYKNITKVPKSIGNLLDLRYLNLSHTSIERLPSETCKLYHLQFLLLAGCKRLTELPEDMGKLINLRHLDVSNTALWEMPVQIAKLENLHTLSDFVVSKHNGGLNIADLGKLPHLRGKLSISQLQNVNDSFEVDQANIKMKEQINELAMEWDCGSTYLDSQIQSVVLEKLRPSTNLKSLTIKGYGGINFPNWLGDFLFSNMVCLRISNCNDCLWLPPLGQLDNLKELIIEGMQSVETIGIEFYGSVGSSFQPFPSLQILHFLNMQEWKEWDLIGGTTTTFPNLKTLSLRKCPKLIVGNITEIFSFLTELELRECPLLVQSISLSDHVFGQLMFPLYSLQQLTIDDFPSLMSFPTDGLPKTLKLLIISNCENLEFLPHDNLHNYTSLEELKISHSCNSMISFPLGTLPVLKSLFIEGCKNLKSILIAEDGSEKSLSFLRSIKIWDCNELDSFPSGGLKTPNLVYIALWKCEKLPSLPEAMNSLSGLHEMEIDNLPNLQSFVIDELPSSLRKLSVGFVGGIRWNTGPTWKHLTCLSELRINGDDMLNTLMGPLLPKKLVKLCICGLNDTSIDEKWLQHLAYLEHLEIINAPKLKSLPKKGFPSSLSVLSVTRCPLLETSLRKKRWKKWRKIAHVPSVVIDEELIT 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07259 1112 SUPERFAMILY L domain-like 438 861 - -
Vivi3g07259 1112 SMART LRR_typ_2 532 555 IPR003591 -
Vivi3g07259 1112 SMART LRR_typ_2 485 508 IPR003591 -
Vivi3g07259 1112 PANTHER DISEASE RESISTANCE PROTEIN RP 52 782 IPR044974 GO:0006952
Vivi3g07259 1112 Gene3D - 45 197 IPR027417 -
Vivi3g07259 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 312 IPR027417 -
Vivi3g07259 1112 PRINTS Disease resistance protein signature 142 156 - -
Vivi3g07259 1112 PRINTS Disease resistance protein signature 251 265 - -
Vivi3g07259 1112 PRINTS Disease resistance protein signature 747 763 - -
Vivi3g07259 1112 PRINTS Disease resistance protein signature 79 94 - -
Vivi3g07259 1112 Gene3D Ribonuclease Inhibitor 442 793 IPR032675 -
Vivi3g07259 1112 SUPERFAMILY L domain-like 800 1085 - -
Vivi3g07259 1112 Gene3D - 298 385 IPR036388 -
Vivi3g07259 1112 Gene3D - 203 297 IPR042197 -
Vivi3g07259 1112 Gene3D Ribonuclease Inhibitor 804 1101 IPR032675 -
Vivi3g07259 1112 Pfam NB-ARC domain 57 309 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07259 Vivi-Chr3 202054281 202064918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07259 456 570 WRKY Transcription Factor Family AT4G12020 35.345 3.39e-08 56.2