Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07246 ATGGCGTCAGCATCATTGATAGAATCTCTTGTTCTTCAACTCCATGAGATATCGGCTGTCAAATTCGGCAACTTCAAGCTCAAATCTGGCATCTCTTCACCAATCTACATCGACCTCCGTCTCATTATATCTTATCCTTCTCTCCTCCGGCAAATCTCTGAGACCCTAATTTCCTCTGTCTCATCCACTTCCTTTGAAGTTGTATGTGGTGTTCCTTACACTGCCTTGCCCATCGCCACATGTGTCTCTCTTGCTCAGAACATCCCCATGGTCATGCGTCGTAAGGAAGTCAAAGACTATGGCACTGCTAAAGCCATTGAAGGTGATTTCAAGCCTGGGCAGAGTTGCTTAATCATTGAGGATTTGGTTACCAGTGGAACATCAGTTTTGGAAACAGCTAGGCCGCTACAATCTGTAGGGTTGAAGGTCACTGATGCTGTTGTCTTGATCGATAGAGAACAAGGTGGGAGGGAAAATTTGGAGGAGAATGGCATCAAGCTGCATGCCATTATCAAATTGACTGAAATGGTGAAAATTTTGAGGAATCATGGAAGACTTGATGACGAGATGGTAGGGGTTGTTACAAAATTCTTAGATGAGAATCGGAAGGTTGCAGCTTTGGCAAAGGTTGAAAAACCAATAACTAAGGTCAAGTCCTTATCGTTTGGAGAGAGGGCTAGTCTGTCCAAGAATCCAACAGGAAAGAAGTTGTTTGAGATAATGGCTCAGAAGGAGAGTAACCTGTGTTTGGCTGCAGATGTTGGAACTGCCGCTGAATTGCTTGCAATTGCTGAGAAGGTTGGACCTGAGATATGCTTGCTGAAGACTCATGTGGATATTTTGCCTGATTTTACTCCTGATTTTGGCTCTAAGCTTCTCTCGATTGCAGAAAAACACAACTTCTTAATCTTTGAGGATCGTAAGTTTGCTGACATTGGTAACACAGTTACCATGCAATATGAAGGAGGAATCTTTCACATATTGGATTGGGCTCACATAGTAAATGCTCACATAATCTCTGGTCCTGGAATCGTGGATGGACTAAAATTGAAGGGTTTGCCTCGTGGCAGGGGACTATTGCTGCTTGCTGAAATGAGCTCAGCTGGTAACCTTGCCAAGGGAGATTATACCGCAGCTGCAGTGAAAATTGCTGAGGAGCATTCCGACTTTGTAATTGGCTTCATCTCTGTCAACCCAGCATCATGGCCAGGGGCACCCATAAATCCTTCATTCATTCAGGCAACTCCTGGGGTTCAAATGGTGACTGGTGGTGATGGTTTAGGGCAGCAATATAACACTCCACATTCTGTCGTTCATGATAGGGGAAGTGACATTATAATCGTGGGACGTGGCATCATCAAGGCAGCAAATCCTGCCGAGGCAGCTCATGAATACCGTCTACAAGGATGGAAAGCATATTTGGCCAAATCTGCTTGA 1437 0.4461 MASASLIESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSLLRQISETLISSVSSTSFEVVCGVPYTALPIATCVSLAQNIPMVMRRKEVKDYGTAKAIEGDFKPGQSCLIIEDLVTSGTSVLETARPLQSVGLKVTDAVVLIDREQGGRENLEENGIKLHAIIKLTEMVKILRNHGRLDDEMVGVVTKFLDENRKVAALAKVEKPITKVKSLSFGERASLSKNPTGKKLFEIMAQKESNLCLAADVGTAAELLAIAEKVGPEICLLKTHVDILPDFTPDFGSKLLSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWAHIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTAAAVKIAEEHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDGLGQQYNTPHSVVHDRGSDIIIVGRGIIKAANPAEAAHEYRLQGWKAYLAKSA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07246 478 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 246 465 IPR001754 GO:0004590|GO:0006207
Vivi3g07246 478 CDD OMP_decarboxylase_like 248 465 - -
Vivi3g07246 478 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 4 476 - -
Vivi3g07246 478 SMART OMPdecase_2 247 465 IPR001754 GO:0004590|GO:0006207
Vivi3g07246 478 SUPERFAMILY Ribulose-phoshate binding barrel 220 474 IPR011060 -
Vivi3g07246 478 Pfam Phosphoribosyl transferase domain 57 158 IPR000836 -
Vivi3g07246 478 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 231 IPR023031 GO:0004588|GO:0006221
Vivi3g07246 478 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 303 316 IPR018089 GO:0004590|GO:0006207
Vivi3g07246 478 NCBIfam orotate phosphoribosyltransferase 14 175 IPR004467 GO:0004588
Vivi3g07246 478 NCBIfam orotidine-5'-phosphate decarboxylase 248 466 IPR014732 GO:0004590|GO:0044205
Vivi3g07246 478 CDD PRTases_typeI 65 172 IPR000836 -
Vivi3g07246 478 Gene3D Aldolase class I 216 477 IPR013785 -
Vivi3g07246 478 Gene3D - 2 211 IPR029057 -
Vivi3g07246 478 FunFam Uridine monophosphate synthetase 3 207 - -
Vivi3g07246 478 FunFam Uridine monophosphate synthetase 217 478 - -
Vivi3g07246 478 SUPERFAMILY PRTase-like 3 192 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07246 Vivi-Chr3 201971474 201975243 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07246 K13421 - gmx:100807008 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g07246 3 201971474 201975243 Vivi3g07246 3 201971474 201975243 ECH
Vivi3g07246 3 201971474 201975243 Vivi7g04759 7 122026112 122030026 PCT