Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07244 ATGGAGATGGAGATTCATCAAGAAAATTCTGAAATCAACGGTATACCAGGGTCAGGATCTTGCCTATATGATCTCTTCTGCACAGAAACACCAAGTTTGAATTCTCAAAGTCAAAGAGAGCGATGGATGATATCTGGTCCACAAGAAAGATTAGACAATCTGATGCGTCAAGCTGGGAACAAGTATTGCGCTGATTGTGGATCGTCGGATCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCCGGTATACATAGAAGCCTTGGAGTCCATATATCTAAGGTTCTGTCACTGAATCTAGATGACTGGACAGATGAACAAGTTGATTCATTGGTCAACTTGGGAGGAAATACAGTAATCAATAAGAAGTACGAAGCTTGCTTGCCAACTTACATAAAAAAACCAAAACCAAATTCTTCTATCGACGAGCGCTCTGATTTTATTAGGAGAAAATACGAGTTCCTACAATTTTTGGATTCTGAGGAGAATTTGTCGTGTCCCTTTATACCATCCCATGGAAGATCTTCTTCATCTGGTCAGAGCAGTTCCTCAAACCACATTCCTCCGCCAGAAAAAAAACGTTATGATAAACAAACAACAAGAAACCGTATCGGGCTATCGTTTCGAAACAGCTGGGGAAGAAAAGATTCCGAGCTCAAGGCTGCAAAGAAGAGTACCTCGTTGGCAGGTATGGTTGAATTTGTTGGATTGATAAAAGTTAACGTGGTTAAAGGCACGAACCTAGCTATCAGAGATTTAGTGACTAGTGACCCTTATGTCATCCTTTCCCTCGGTAACCAATCGGTGAAAACGCGTGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAAAGCCTAATGTTGTCAATTCCCGAGAGCATTCCTCCTCTTAGAGTGATTGTATATGACAAAGATGCATTCAAAAATGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCACTAGTATCAGCAGCAAAAGCATATGAAAAATCATCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGAAAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGAAATCTCATTGAGGCTACAAAATGTTGAGAGAGGTGTGCTTGAAATTGAACTTGAATGTGTTCCTCTTACTCAATAG 1194 0.3961 MEMEIHQENSEINGIPGSGSCLYDLFCTETPSLNSQSQRERWMISGPQERLDNLMRQAGNKYCADCGSSDPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDDWTDEQVDSLVNLGGNTVINKKYEACLPTYIKKPKPNSSIDERSDFIRRKYEFLQFLDSEENLSCPFIPSHGRSSSSGQSSSSNHIPPPEKKRYDKQTTRNRIGLSFRNSWGRKDSELKAAKKSTSLAGMVEFVGLIKVNVVKGTNLAIRDLVTSDPYVILSLGNQSVKTRVIKNNLNPVWNESLMLSIPESIPPLRVIVYDKDAFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGENTLVKDGIISLEEGKVRQEISLRLQNVERGVLEIELECVPLTQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07244 397 ProSiteProfiles C2 domain profile. 220 339 IPR000008 -
Vivi3g07244 397 MobiDBLite consensus disorder prediction 174 193 - -
Vivi3g07244 397 MobiDBLite consensus disorder prediction 174 205 - -
Vivi3g07244 397 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Vivi3g07244 397 Gene3D C2 domain 240 394 IPR035892 -
Vivi3g07244 397 Pfam Putative GTPase activating protein for Arf 49 164 IPR001164 GO:0005096
Vivi3g07244 397 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 44 397 IPR044518 GO:0005096|GO:0005543
Vivi3g07244 397 SMART C2_3c 242 337 IPR000008 -
Vivi3g07244 397 FunFam stromal membrane-associated protein 1 isoform X1 33 168 - -
Vivi3g07244 397 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 239 397 - -
Vivi3g07244 397 Pfam C2 domain 242 332 IPR000008 -
Vivi3g07244 397 CDD C2_ArfGAP 240 384 - -
Vivi3g07244 397 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Vivi3g07244 397 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Vivi3g07244 397 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Vivi3g07244 397 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Vivi3g07244 397 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 332 IPR035892 -
Vivi3g07244 397 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Vivi3g07244 397 Gene3D Arf GTPase activating protein 31 170 IPR038508 -
Vivi3g07244 397 CDD ArfGap 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07244 Vivi-Chr3 201956980 201960709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07244 48 397 C2H2 Transcription Factor Family AT4G05330 47.714 2.35e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07244 K12486 - gmx:100799376 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g07244 3 201956980 201960709 Vivi7g04761 7 122049278 122052547 PCT