Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07231 ATGTCCACTTCCGATTCCACTCCGAATCTCAAACTCTCCGGTTTCCTCTCTACCGTTCTCACACTCTCTCCTCCGCATAATCCCAACGACGCGCGTTTCAATGACCGCTGCGAGATCTTCAACGACGGAGCATCCACTGGATTCCGTACTCAGAACGGCGTCGTTTTGGTCCCTATTGTTGATTCGGAAGAATGCAAGAGCGCGAAGAGGAAGAAGATTGGTGCGGTGAATGGGAGCTTTAGTGTTGTGAATCAGCTTTATGCGTTGGTTGTTCGGAAATGTTTGGAGATTGATGTTCGGGTTTTGTGTGTTGTTGAGGTTTTGGATAGGGTTAGGGTTGTGGTGATTGTTGATGTTTATCTTCCGGTTCAGGTTTGGTGTGGCTGGCAGTTTCCGAAATCTGGTTCGGTTGCCGGCGCGGTTTTTCGTCATTTGAGGTGTGATTGGGATGAGAGAAGATCAATGCTTTCTGATCCAAACTACTGTAGGAAGACTCATGTAGAAAATGAGAGCATTTGGAACCTTCCTGTTTGCCATGTACTTGGTTGCAATCTCCATTCCTCTGTGAGAGATTCTTCAAGGGAAAGGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTATAGGAAAACAACAACATATTAATATTTCCAAGATAAAACCTATGGACAACACTTGCAAATCTGGGATTTGGGAGATCTCTGATGATATTTTAATTAAAATTATATCTTCCCTGGGCCCAATGGACCTCACTAGGGTTTCTGTAACGTGTCATCATCTAAGATCCTTGGCTGCTTCAATAATACCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCACCGTGAGCGAAATGCTGAACTTTTGCTACATCCTTTATATGTAGCTCTTTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGATATAGTCATCGGGGAAGCTCCTACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACAAAGACACAAGGTACGTTGGCGGATCCACCAGATGGGACACAAGTAGTTTGGTGTCAACATAGCTCTACCCAAAAATGTGGCTATTATGAGATCAGTGGTAATAACATCACTAGTTGTACTATCTTGGGTAAGAGGGGTGTGTGTCCAAATACAGGTAAAAATAATGAGAACCATGGTTACTCCTCCCCAAGAGCCAAGTTGTTAAATCCTTGTCAGGAAATCACTAAATCTCGTGATTCATGTTCTGTAGGTGAAAACAAATCACCTGTAGATGTCTGCTTTGAGGAATATACACCTGCTAGTCAAGGCACTAGAAGTTTTAGCCGAGTAAAGAAAAATCTACATTTCACATATGACGAGGAAGCCATGACTTCCAAAGAAAGAAGTGTTGGTAAAAGACCAATTAAAACAAAACATGCATCGGATGTTGCATCCCTTATGTCTCAAAACAAGCTTGTTGATACAAACCTTAGTGGGCAGAATTATAAGTGGCACGGGAAGCGTAAAGCTGATTGTTTGGAATATAGTGATAATTGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAACTTGCAGACAATAGTTTGGATAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACCGACCCTTCATATCAGAGTTGTAGAGTCCCAGAGCAATATATTCAGAATAGCTGTGAGATAACTTACTTGCGAGGATTTCACTTGAAAGGAACTGCTGGAGGTGAGAAACAAAACGTATCATTTTTCACCAGTGTTCTTAAGGAACACCGCTCATTGGTAAATTCTCAGACAAAGAAGGCCCTGATTTGGTTGACCAAAATTTCGATGGATAAGCTTGCAGTAATGGAAACAAATGGTATACGGAGTCCTATTTTAAACAATTGCCGTTTGTCTAATGGGACTTTGAATCCATACCACAAAATATTTCAAGCATTTGGCCTCACAAAGAGATTTGAGAAAGGTGTATGCAGGTGGTTCTACCCAAAAAATCTTAGCAATTTGACTTTTGATGTGGCTGCCCTTGGTATGGCTCTATGTGAGCCATTAGATTTGGTTAGGTTATACTTGTCAAGAGCAACCTTGGTAGTTGTTCCTGCAAACTTGGTCGATCATTGGAAAGCACAAATAGAAAAGCATGTTAGTCCTGGTCAATTGCAGGTTTATGTTTGGAAAGATCATCTGAAACCATCTGCACACTCTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAATGGGGGCCACGTAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTACAAATGGCTATTTCACTGGTTGCTTCAAATCGATGGATACTAACTGGAACTCCAACACCTAACACTCCTAACAGCCAACTTACGCATCTACAACCATTGCTAAGGTTCCTTCATGAAGAGGCTTATGGGCTGAGTCAAAAATCATGGGAGGCCGGCGTGCTTAGGCCGTTTGAGGCAGAGATGGAAGAAGGTCGGTCTCGTCTGTTGCATTTACTTCAGAAATGCCTTATTAGTGCTAGAAAGGTAGATTTACAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTACTAGATTTTAACGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGAAACTTTAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAGCAATGGATCTGTTAGTACAAAATGGTTTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATACAGTCTCCTGTTTGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGGCTTCCTCTCATTACTCCATGTCGACATCTGTTGTGCCTTGGTTGTGTTTCCTTAGATAAGACAAAATGTACATATCCTGGCTGTGATAACTTATATGAGATGCAGAGTCCTGATACAATGGCGCGTCCAGAAAATCCTAACCCAAAGTGGTCTGTACCCAAAGATCTTATTGAGTTACAACCTTCATATAAGCAGGATACGTGGGATCCTGATTGGCAGTCGACTTCTAGTACTAAAGTTGCATATCTTGTTCAGAGGTTGAAAGCTTTGCAAGGAACTAATAAAGAAACGAGTTCGTATATGGACAGTAGCAATAATGCGATGCATATTGAGAATAGTTTTCCTTTGCACACAAGACATGCCGAATCACCATTCCAAGAATGTTCTACAAGTAGGACTAGCACCAACGTGGTCCCTGAAAAAGTCTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTGTTAATGGTATCAAATATACTGGGATGTTCAACCCAATGCAATCTAGCCACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCGTTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTCTGATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATAAGTCGTGCCCATCGTATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAACGTAGAAGATTTCATAATAAAGATGCTAAATCTGAAGACGGTGGAGGACGTGGATGTCGATCGGTGCATGATTTTGCCGAAAGCAATTATCTATTGGAACTTAAATTTGTATAA 3966 0.413 MSTSDSTPNLKLSGFLSTVLTLSPPHNPNDARFNDRCEIFNDGASTGFRTQNGVVLVPIVDSEECKSAKRKKIGAVNGSFSVVNQLYALVVRKCLEIDVRVLCVVEVLDRVRVVVIVDVYLPVQVWCGWQFPKSGSVAGAVFRHLRCDWDERRSMLSDPNYCRKTHVENESIWNLPVCHVLGCNLHSSVRDSSRERLFELHEIFKTVPSPCIGKQQHINISKIKPMDNTCKSGIWEISDDILIKIISSLGPMDLTRVSVTCHHLRSLAASIIPCTKLNLFPHQQAAVEWMLHRERNAELLLHPLYVALSTDDGFSFHVNTVSGDIVIGEAPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPPDGTQVVWCQHSSTQKCGYYEISGNNITSCTILGKRGVCPNTGKNNENHGYSSPRAKLLNPCQEITKSRDSCSVGENKSPVDVCFEEYTPASQGTRSFSRVKKNLHFTYDEEAMTSKERSVGKRPIKTKHASDVASLMSQNKLVDTNLSGQNYKWHGKRKADCLEYSDNWIQCDACHKWRKLADNSLDNSSAAWFCSMNTDPSYQSCRVPEQYIQNSCEITYLRGFHLKGTAGGEKQNVSFFTSVLKEHRSLVNSQTKKALIWLTKISMDKLAVMETNGIRSPILNNCRLSNGTLNPYHKIFQAFGLTKRFEKGVCRWFYPKNLSNLTFDVAALGMALCEPLDLVRLYLSRATLVVVPANLVDHWKAQIEKHVSPGQLQVYVWKDHLKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLSLTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLSQKSWEAGVLRPFEAEMEEGRSRLLHLLQKCLISARKVDLQSIPPCIKKVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETLKNVRLSCCVAGHIKVTHAGEDIQEAMDLLVQNGLDSTSGEYTSIRYSLLFGGHCVRCKEWCRLPLITPCRHLLCLGCVSLDKTKCTYPGCDNLYEMQSPDTMARPENPNPKWSVPKDLIELQPSYKQDTWDPDWQSTSSTKVAYLVQRLKALQGTNKETSSYMDSSNNAMHIENSFPLHTRHAESPFQECSTSRTSTNVVPEKVLIFSQFLEHIHVIEQQLTVNGIKYTGMFNPMQSSHKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKRRRFHNKDAKSEDGGGRGCRSVHDFAESNYLLELKFV 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07231 1321 Pfam CW-type Zinc Finger 536 579 IPR011124 GO:0008270
Vivi3g07231 1321 Gene3D - 701 893 IPR038718 -
Vivi3g07231 1321 CDD F-box_SF 236 268 - -
Vivi3g07231 1321 ProSitePatterns Zinc finger RING-type signature. 1027 1036 IPR017907 -
Vivi3g07231 1321 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 129 1285 - -
Vivi3g07231 1321 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1149 1294 IPR001650 -
Vivi3g07231 1321 SUPERFAMILY F-box domain 229 270 IPR036047 GO:0005515
Vivi3g07231 1321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 684 849 IPR014001 -
Vivi3g07231 1321 Pfam Helicase conserved C-terminal domain 1155 1255 IPR001650 -
Vivi3g07231 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 886 IPR027417 -
Vivi3g07231 1321 Coils Coil 1318 1321 - -
Vivi3g07231 1321 Gene3D - 531 584 - -
Vivi3g07231 1321 Pfam F-box domain 237 273 IPR001810 GO:0005515
Vivi3g07231 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 360 IPR027417 -
Vivi3g07231 1321 SMART fbox_2 237 277 IPR001810 GO:0005515
Vivi3g07231 1321 Pfam SNF2-related domain 282 947 IPR000330 GO:0005524|GO:0140658
Vivi3g07231 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 791 1281 IPR027417 -
Vivi3g07231 1321 SMART helicmild6 1173 1255 IPR001650 -
Vivi3g07231 1321 CDD DEXDc_SHPRH-like 708 890 - -
Vivi3g07231 1321 CDD SF2_C_SNF 1160 1265 - -
Vivi3g07231 1321 Gene3D - 1061 1303 IPR027417 -
Vivi3g07231 1321 ProSiteProfiles Zinc finger CW-type profile. 531 582 IPR011124 GO:0008270
Vivi3g07231 1321 SMART ultradead3 275 860 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07231 Vivi-Chr3 201685784 201693223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07231 279 357 RAD5 or RAD16-like Gene Family AT5G22750 34.884 7.77e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi3g07231 SNF2_N 2.4e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07231 - - gmx:100803102 2022.67