Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07230 ATGTCCACTTCCGATTCCACTCCGAATCTCAAACTCTCCGGTTTCCTCTCTACCGTTCTCACACTCTCTCCTCCGCATAATCCCAACGACGCGCGTTTCAATGACCGCTGCGAGATCTTCAACGACGGAGCATCCACTGGATTCCGTACTCAGAACGGCGTCGTTTTGGTCCCTATTGTTGATTCGGAAGAATGCAAGAGCGCGAAGAGGAAGAAGATTGGTGCGGTGAATGGGAGCTTTAGTGTTGTGAATCAGCTTTATGCGTTGGTTGTTCGGAAATGTTTGGAGATTGATGTTCGGGTTTTGTGTGTTGTTGAGGTTTTGGATAGGGTTAGGGTTGTGGTGATTGTTGATGTTTATCTTCCGGTTCAGGTTTGGTGTGGCTGGCAGTTTCCGAAATCTGGTTCGGTTGCCGGCGCGGTTTTTCGTCATTTGAGGTGTGATTGGGATGAGAGAAGATCAATGCTTTCTGATCCAAACTACTGTAGGAAGACTCATGTAGAAAATGAGAGCATTTGGAACCTTCCTGTTTGCCATGTACTTGGTTGCAATCTCCATTCCTCTGTGAGAGATTCTTCAAGGGAAAGGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTATAGGAAAACAACAACATATTAATATTTCCAAGATAAAACCTATGGACAACACTTGCAAATCTGGGATTTGGGAGATCTCTGATGATATTTTAATTAAAATTATATCTTCCCTGGGCCCAATGGACCTCACTAGGGTTTCTGTAACGTGTCATCATCTAAGATCCTTGGCTGCTTCAATAATACCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCACCGTGAGCGAAATGCTGAACTTTTGCTACATCCTTTATATGTAGCTCTTTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGATATAGTCATCGGGGAAGCTCCTACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACAAAGACACAAGGTACGTTGGCGGATCCACCAGATGGGACACAAGTAGTTTGGTGTCAACATAGCTCTACCCAAAAATGTGGCTATTATGAGATCAGTGGTAATAACATCACTAGTTGTACTATCTTGGGTAAGAGGGGTGTGTGTCCAAATACAGGTGAAAACAAATCACCTGTAGATGTCTGCTTTGAGGAATATACACCTGCTAGTCAAGGCACTAGAAGTTTTAGCCGAGTAAAGAAAAATCTACATTTCACATATGACGAGGAAGCCATGACTTCCAAAGAAAGAAGTGTTGGTAAAAGACCAATTAAAACAAAACATGCATCGGATGTTGCATCCCTTATGTCTCAAAACAAGCTTGTTGATACAAACCTTAGTGGGCAGAATTATAAGTGGCACGGGAAGCGTAAAGCTGATTGTTTGGAATATAGTGATAATTGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAACTTGCAGACAATAGTTTGGATAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACCGACCCTTCATATCAGAGTTGTAGAGTCCCAGAGCAATATATTCAGAATAGCTGTGAGATAACTTACTTGCGAGGATTTCACTTGAAAGGAACTGCTGGAGGTGAGAAACAAAACGTATCATTTTTCACCAGTGTTCTTAAGGAACACCGCTCATTGGTAAATTCTCAGACAAAGAAGGCCCTGATTTGGTTGACCAAAATTTCGATGGATAAGCTTGCAGTAATGGAAACAAATGGTATACGGAGTCCTATTTTAAACAATTGCCGTTTGTCTAATGGGACTTTGAATCCATACCACAAAATATTTCAAGCATTTGGCCTCACAAAGAGATTTGAGAAAGGTGTATGCAGGTGGTTCTACCCAAAAAATCTTAGCAATTTGACTTTTGATGTGGCTGCCCTTGGTATGGCTCTATGTGAGCCATTAGATTTGGTTAGGTTATACTTGTCAAGAGCAACCTTGGTAGTTGTTCCTGCAAACTTGGTCGATCATTGGAAAGCACAAATAGAAAAGCATGTTAGTCCTGGTCAATTGCAGGTTTATGTTTGGAAAGATCATCTGAAACCATCTGCACACTCTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAATGGGGGCCACGTAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTACAAATGGCTATTTCACTGGTTGCTTCAAATCGATGGATACTAACTGGAACTCCAACACCTAACACTCCTAACAGCCAACTTACGCATCTACAACCATTGCTAAGGTTCCTTCATGAAGAGGCTTATGGGCTGAGTCAAAAATCATGGGAGGCCGGCGTGCTTAGGCCGTTTGAGGCAGAGATGGAAGAAGGTCGGTCTCGTCTGTTGCATTTACTTCAGAAATGCCTTATTAGTGCTAGAAAGGTAGATTTACAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTACTAGATTTTAACGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGAAACTTTAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAGCAATGGATCTGTTAGTACAAAATGGTTTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATACAGTCTCCTGTTTGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGGCTTCCTCTCATTACTCCATGTCGACATCTGTTGTGCCTTGGTTGTGTTTCCTTAGATAAGACAAAATGTACATATCCTGGCTGTGATAACTTATATGAGATGCAGAGTCCTGATACAATGGCGCGTCCAGAAAATCCTAACCCAAAGTGGTCTGTACCCAAAGATCTTATTGAGTTACAACCTTCATATAAGCAGGATACGTGGGATCCTGATTGGCAGTCGACTTCTAGTACTAAAGTTGCATATCTTGTTCAGAGGTTGAAAGCTTTGCAAGGAACTAATAAAGAAACGAGTTCGTATATGGACAGTAGCAATAATGCGATGCATATTGAGAATAGTTTTCCTTTGCACACAAGACATGCCGAATCACCATTCCAAGAATGTTCTACAAGTAGGACTAGCACCAACGTGGTCCCTGAAAAAGTCTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTGTTAATGGTATCAAATATACTGGGATGTTCAACCCAATGCAATCTAGCCACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCGTTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTCTGATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATAAGTCGTGCCCATCGTATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAACGTAGAAGATTTCATAATAAAGATGCTAAATCTGAAGACGGTGGAGGACGTGGATGTCGATCGGTGCATGATTTTGCCGAAAGCAATTATCTATTGGAACTTAAATTTGTATAA 3870 0.4137 MSTSDSTPNLKLSGFLSTVLTLSPPHNPNDARFNDRCEIFNDGASTGFRTQNGVVLVPIVDSEECKSAKRKKIGAVNGSFSVVNQLYALVVRKCLEIDVRVLCVVEVLDRVRVVVIVDVYLPVQVWCGWQFPKSGSVAGAVFRHLRCDWDERRSMLSDPNYCRKTHVENESIWNLPVCHVLGCNLHSSVRDSSRERLFELHEIFKTVPSPCIGKQQHINISKIKPMDNTCKSGIWEISDDILIKIISSLGPMDLTRVSVTCHHLRSLAASIIPCTKLNLFPHQQAAVEWMLHRERNAELLLHPLYVALSTDDGFSFHVNTVSGDIVIGEAPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPPDGTQVVWCQHSSTQKCGYYEISGNNITSCTILGKRGVCPNTGENKSPVDVCFEEYTPASQGTRSFSRVKKNLHFTYDEEAMTSKERSVGKRPIKTKHASDVASLMSQNKLVDTNLSGQNYKWHGKRKADCLEYSDNWIQCDACHKWRKLADNSLDNSSAAWFCSMNTDPSYQSCRVPEQYIQNSCEITYLRGFHLKGTAGGEKQNVSFFTSVLKEHRSLVNSQTKKALIWLTKISMDKLAVMETNGIRSPILNNCRLSNGTLNPYHKIFQAFGLTKRFEKGVCRWFYPKNLSNLTFDVAALGMALCEPLDLVRLYLSRATLVVVPANLVDHWKAQIEKHVSPGQLQVYVWKDHLKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLSLTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLSQKSWEAGVLRPFEAEMEEGRSRLLHLLQKCLISARKVDLQSIPPCIKKVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETLKNVRLSCCVAGHIKVTHAGEDIQEAMDLLVQNGLDSTSGEYTSIRYSLLFGGHCVRCKEWCRLPLITPCRHLLCLGCVSLDKTKCTYPGCDNLYEMQSPDTMARPENPNPKWSVPKDLIELQPSYKQDTWDPDWQSTSSTKVAYLVQRLKALQGTNKETSSYMDSSNNAMHIENSFPLHTRHAESPFQECSTSRTSTNVVPEKVLIFSQFLEHIHVIEQQLTVNGIKYTGMFNPMQSSHKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKRRRFHNKDAKSEDGGGRGCRSVHDFAESNYLLELKFV 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07230 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 360 IPR027417 -
Vivi3g07230 1289 ProSitePatterns Zinc finger RING-type signature. 995 1004 IPR017907 -
Vivi3g07230 1289 Pfam CW-type Zinc Finger 504 547 IPR011124 GO:0008270
Vivi3g07230 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 1249 IPR027417 -
Vivi3g07230 1289 SMART ultradead3 275 828 IPR014001 -
Vivi3g07230 1289 CDD F-box_SF 236 268 - -
Vivi3g07230 1289 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1117 1262 IPR001650 -
Vivi3g07230 1289 Pfam F-box domain 237 273 IPR001810 GO:0005515
Vivi3g07230 1289 Gene3D - 669 861 IPR038718 -
Vivi3g07230 1289 Gene3D - 1028 1271 IPR027417 -
Vivi3g07230 1289 SUPERFAMILY F-box domain 229 270 IPR036047 GO:0005515
Vivi3g07230 1289 Pfam Helicase conserved C-terminal domain 1123 1223 IPR001650 -
Vivi3g07230 1289 ProSiteProfiles Zinc finger CW-type profile. 499 550 IPR011124 GO:0008270
Vivi3g07230 1289 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 652 817 IPR014001 -
Vivi3g07230 1289 SMART helicmild6 1141 1223 IPR001650 -
Vivi3g07230 1289 SMART fbox_2 237 277 IPR001810 GO:0005515
Vivi3g07230 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 681 854 IPR027417 -
Vivi3g07230 1289 Pfam SNF2-related domain 282 915 IPR000330 GO:0005524|GO:0140658
Vivi3g07230 1289 CDD DEXDc_SHPRH-like 676 858 - -
Vivi3g07230 1289 Gene3D - 499 552 - -
Vivi3g07230 1289 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 129 1253 - -
Vivi3g07230 1289 CDD SF2_C_SNF 1128 1233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07230 Vivi-Chr3 201685784 201693223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07230 279 357 RAD5 or RAD16-like Gene Family AT5G22750 34.884 8.21e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi3g07230 SNF2_N 2.2e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07230 - - gmx:100803102 1969.13