Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07217 ATGGGAACTCTCCTCGGAAACCTCAACCTAATGAACCCCAGCAAGAATCTAAACTGGAACTGTTTGGATATGATTCCATTGTCAATATTCTTGGTCTCAAAAGGTGGATATGATAAAGAAGAGAAAGCTGCTAGATCTTATGATTTAGCTGCACTTAAGTATTGGGGGACATCCACCACTACTAACTTTCCAGTTAGTAACTATGAGAAGGAAATAGATGAAATGAAGCACATGACAAGACAAGAATTTGTAGCCTCTATTAGAAGGAAAAGTAGTGGTTTCTCAAGGGGTGCTTCAATGTACCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGTAGAGTAGCCGGAAACAAAGATCTTTACTTGGGAACTTTCAGCACAGAAGAAGAGGCTGCAGAAGCATATGACATAGCAGCAATAAAATTCAGAGGACTCAACGCTGTAACTAACTTCGACATGACTCGTTACGATGTGAAAGCCATTCTCGAAAGCAACACACTTCCAATTGGAGGAGGTGCTGCAAAAAGGCTAAAAGAAGCGCAAGCTCTAGAAACTTCCAGAAAACGTGAAGAGCTGATTGCGCTCAACTCGTCTTCTTTCCAATATGGAGCATCGAGCTCGAGTAACGCAAGGCTTCAACCTTACCCTCTCGCACATTATCAATATCCATTTGAACAACCACCTCAACCTTTGTTAACCTTACAAAACAGCCATGATAGCATCTCTCAATTCTCTCAACGACAAGGAGGTGGTTATTTCCATACACAGCTTGAGTTGCACCAACAACAACAGAACCAACAAACGTCTCAGAATAATAATATCGGTTCGTTCTACAACGGTTATTTTCAGAGTCATCATCCTGAGGCTGTTTTGACAAAGCCGACTGATCCAGGAGCAGTTTGA 921 0.4224 MGTLLGNLNLMNPSKNLNWNCLDMIPLSIFLVSKGGYDKEEKAARSYDLAALKYWGTSTTTNFPVSNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGGAAKRLKEAQALETSRKREELIALNSSSFQYGASSSSNARLQPYPLAHYQYPFEQPPQPLLTLQNSHDSISQFSQRQGGGYFHTQLELHQQQQNQQTSQNNNIGSFYNGYFQSHHPEAVLTKPTDPGAV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07217 306 FunFam AP2-like ethylene-responsive transcription factor 99 160 - -
Vivi3g07217 306 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Vivi3g07217 306 SMART rav1_2 26 70 IPR001471 GO:0003700|GO:0006355
Vivi3g07217 306 SUPERFAMILY DNA-binding domain 34 66 IPR016177 GO:0003677
Vivi3g07217 306 Gene3D AP2/ERF domain 31 66 IPR036955 GO:0003700|GO:0006355
Vivi3g07217 306 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vivi3g07217 306 SUPERFAMILY DNA-binding domain 99 159 IPR016177 GO:0003677
Vivi3g07217 306 MobiDBLite consensus disorder prediction 266 285 - -
Vivi3g07217 306 CDD AP2 99 158 IPR001471 GO:0003700|GO:0006355
Vivi3g07217 306 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 33 258 - -
Vivi3g07217 306 ProSiteProfiles AP2/ERF domain profile. 35 64 IPR001471 GO:0003700|GO:0006355
Vivi3g07217 306 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vivi3g07217 306 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07217 Vivi-Chr3 200986516 200992181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07217 32 290 AP2-EREBP Transcription Factor Family AT1G51190 74.627 7.25e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi3g07217 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07217 K09285 - gmx:100170752 395.971