Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07209 ATGGCACAGTTTCATGTTTTGGCTGTTGATGATAGTGTTATTGATAGAATGCTGATTGAAAGACTCCTCAAAACCTCTTCATTTCATGTTACTGTGGTTGATTCTGGAAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAGATGAGGAATGAAAAGGTTTCATCTATGGCTACGGAAACAGATCAGGTTGTGGAAGTGAATCTGATTATAACTGATTATTGTATGCCAGGAATGACAGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAATTCTCTTAAAGACATACCAGTTGTGATTATGTCATCTGAAAATGTTCCATCAAGAATCAACAGATGTTTAGAAGAAGGAGCTGAGGAATTTTTTCTGAAACCAGTTCAACAATCTGATGTAAACAAGCTGAAACCACATTTGTTGAAGACAAAAGTTAAGAATGTTGATGACCAAACCAACAACATAGGAAGGATAGAGAACAATAATAGATGTTACATTCAAAATTAG 507 0.3531 MAQFHVLAVDDSVIDRMLIERLLKTSSFHVTVVDSGSKALKFLGLVEDEMRNEKVSSMATETDQVVEVNLIITDYCMPGMTGYDLLRKIKESNSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLKPHLLKTKVKNVDDQTNNIGRIENNNRCYIQN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07209 168 SMART REC_2 4 140 IPR001789 GO:0000160
Vivi3g07209 168 SUPERFAMILY CheY-like 3 136 IPR011006 -
Vivi3g07209 168 Gene3D - 5 162 - -
Vivi3g07209 168 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 149 IPR045279 GO:0009736
Vivi3g07209 168 Pfam Response regulator receiver domain 6 133 IPR001789 GO:0000160
Vivi3g07209 168 CDD REC_typeA_ARR 6 136 - -
Vivi3g07209 168 ProSiteProfiles Response regulatory domain profile. 5 141 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07209 Vivi-Chr3 200305994 200308356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07209 2 161 Response Regulator Gene Family AT3G57040 66.667 5.35e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g07209 Response_reg 9.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07209 K14492 - gmx:100818762 251.136