Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07196 ATGTTAGTGGTTGTCTCTCTCTTTTTCTCTCTTATTATTAACCTTTCTTATTCTTCTTCATGTGACCCTTCAAACTTTGCAACAAAATGTTATCATCAAAACACTACAAACTCTCAAAAACCTCACACTAGATGGATCATACTATCATGCTCAAAAGCAATGAATGAAAAACAAGAAACCAAAGACCAAAACCCTCCAACATCACAAGACTCACAAAAGAAACAACAAACCATCACCATCAACACAACAACAAATGAGAGACTAAAAAGAGATGAATGGAGTGAAGGAGCAGTGACAACACTTCTTGAGTCCTATGAATCAAAATGGATCCTTAGAAACCGAGCAAAACTCAAGGGACAAGATTGGGAGGATGTTGCGAAACATGTTTCGTCGCGATCGAATTCTACTAAGTCCCCGAAAACACAAACTCAGTGTAAGAATAAGATTGAGTCCATGAAGAAAAGATATAGATCGGAGTCGGCTAGCTCGGATGTCTCGGCTTGGCCTTTGTATTCTAGGCTTGATGTTCTTCTTCGTGGGACAGGGCAATTAGCTACGAATGTTGCTACGAAATTGCTACAAGTAAGTAGTAATAATAATAATATTAGTAATCATGGTTTGGTTTTGTTGGAACCTTCACAACAAGGGGTTGATGAAGCTAATCAGCTACCAGCTCCTATTAGTGTTGCTAATCAACCACTAATTGCTACTGCTCAAAATTCACATGGATCAAATGGGTTTGAAAAATTAGCCAAGGAAGATGAGTTAGAAACTAAGTCATCTGATCATGCACCTAACAAGAATCCATTGGAAACCGATAGTAGCACGCCCGCGCTCTACAGCGAACAAGACGAGCAAAGATGCAAGAAGCGAAGAATGAGATCGGAAAACAACAATAACAAGAAACATAAGAAAGAAGCAATAGGAATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTTGTTGTAAGGTCAGAGCAAACAAGAATGGACACATTGAAAGAGATAGAGAAGATGAGAGTAGAAGCTGAGGCAAAAAGAGGGGAAATGGAGATCAAGAGGACTGAAATTATTGCTAATACACAACTTGAGATTGCTAGGATCTTTGCAAATGTTAATAATAAAGATAAAGATGTTGATTCATCATTGAGAATTGGAAGAAGTTAA 1164 0.3823 MLVVVSLFFSLIINLSYSSSCDPSNFATKCYHQNTTNSQKPHTRWIILSCSKAMNEKQETKDQNPPTSQDSQKKQQTITINTTTNERLKRDEWSEGAVTTLLESYESKWILRNRAKLKGQDWEDVAKHVSSRSNSTKSPKTQTQCKNKIESMKKRYRSESASSDVSAWPLYSRLDVLLRGTGQLATNVATKLLQVSSNNNNISNHGLVLLEPSQQGVDEANQLPAPISVANQPLIATAQNSHGSNGFEKLAKEDELETKSSDHAPNKNPLETDSSTPALYSEQDEQRCKKRRMRSENNNNKKHKKEAIGIAESIRWLAEVVVRSEQTRMDTLKEIEKMRVEAEAKRGEMEIKRTEIIANTQLEIARIFANVNNKDKDVDSSLRIGRS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07196 387 Gene3D - 93 158 - -
Vivi3g07196 387 MobiDBLite consensus disorder prediction 60 83 - -
Vivi3g07196 387 Pfam Myb/SANT-like DNA-binding domain 90 176 IPR044822 -
Vivi3g07196 387 Coils Coil 332 352 - -
Vivi3g07196 387 MobiDBLite consensus disorder prediction 283 306 - -
Vivi3g07196 387 MobiDBLite consensus disorder prediction 56 83 - -
Vivi3g07196 387 MobiDBLite consensus disorder prediction 253 306 - -
Vivi3g07196 387 MobiDBLite consensus disorder prediction 267 282 - -
Vivi3g07196 387 FunFam Trihelix transcription factor ASIL2 93 158 - -
Vivi3g07196 387 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 66 371 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07196 Vivi-Chr3 200055345 200057208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07196 89 186 Trihelix Transcription Factor Family AT3G14180 35.294 5.96e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi3g07196 Myb_DNA-bind_4 3.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07196 - - vvo:131657107 744.577