Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07169 ATGGAAAACACCGACCATTATGATTCCAACTACTATCGATACCGTGACAGTGGAACATCTGATTCTGAATCGGAGAATGACAGTAATTCGGTGTCCAGTGCGTACCAAAGTTCAAGTGATGGCGATGGCGATGGTGATAGTCACAATGAAAAATTCCATGAATTTGATGCAGTTGTAGGTGATAGAATACTGAAAATTGATGCCCTTACTGCTGATGAAATTCGTGCTATGGAATTCGGTACAGTTGATGAAGCTAATTTGTTTTATTTCAAGTATGCTAAATGTAAAGGGTTTGCCATTAGGAAAAGTGATGTTAGGAGAAGATCGACTGGGGGTGGACAAACAATTATAATGAGGCAGTTTGTATGCAATAAACGCGGTCTAAGAGATACAAAACACTTAAGGAGGCTTGATAGAAAAAGAGAACACAGACCTACGACCCGCACTAATTGTCCCGCTAGGCTTCGTGTGCATTACAACCCCCAGAAGGGTAGTTATGTAGTGTCATGTTTTGAAGAGGCTCACAACCATGAATTAACACCATCTAGGTTTATCCACTTACACCCCATTTATCGTGAGATTACTGCAGCAGATAGAGCTCAGATTGACGGTCTACAGTCAAATGGAATTAGAACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGACACGATCGTGTTGGGTTTACAAAGAAGGATCTGTACAATTATTTTGATAGTAAAATGCGTGCTACTATTAAAGATGGTGACGTTGCCGCTGCTATAAATTATCTAAATGTGAAGTCATCTACTGATCCCATGTTATATGGTAAATATGCCGTAGGCACGGATGGACGAATGAAGTCCCTTTTTTGGGCTGATGGAAGCAGTAGATCTGACTATTTTTGTTTTGGCGATGTGATTGCGTTCGACACGACTTACAAGAAGAACAAATACAACTACCCATTGGTTATATTTTCAGGGTGTAACCACCACTCTCAGACAGTTATTTTTGGTGCTGCATTGGTGTCAGATGAAACGACAGAAACGTATAAGTGGTTGTTGGAGTGTTTTTTAGAGTGCATGGAAAATAAATACCCAGAAGCGGTTGTAACAGATGGAGATGGGGCGATGAGGGAATCTATAAAACAGGTGTTTCCGGATGCGACACATCGTTTATGCGCTTGGCATTTGAACAAGAATGCGACTGAGAATGTAAAGAACTCGGAATTTTTGAAAGATTTTCAAAAAGCCATGTACTCTAATTTTACAAAGGATCAATTTGAAGAGTTTTGGTCAAAAACAATTAAAGAAAACGGACTTGAAGGAAATCCTTGGGTTCAAAAAACGTACGAGAACAGGTCACTATGGGCAACTGCATATCTACGTGAGAAGTTTTTTGCACGTATAAGAACTACGTCTCAATGTGAAGCCGTCAATGCAATCATCAAGAGTTATGTCAGGAAGAAAGGCTGCATTTTTGAATTTATGCACAATTTTGATCAGGCTATGAGATGTTATAGAAACAATGAACTGATTGCCGATTTTAAATCAATGTTTTCAGAACCTGTGATGACTACTCAACTGCGTGCCCTTGAGAGCCATGCTGCGAAAGTTTATACCACGGAGATTTTCAAGGAAGTCAGAGATGAAATAGTGAAGGCTGGATCATTGATTGTTAAGGAAAGGTTATTTCACAACGGATTTAAGACTTATCGATTTACAAAATATTGTTGTGATAACTATGACGTAGAGGTTGTGTATGATGGTGAAACACTTCAATGCGAGTGTAGGTTATGGGATTCTCGTGGGATTCCATGTTCTCATATGTTTGGTGTCATGAAGGAAGAACATGTTAGTCTCATTCCCACCGGTTTGATTTTGTCGAGGTGGACGAAGGATGCAAAAATTCAATACTTGAACATGAATTGTAATGGTTCTGATGATCCTAATATGATTGAGCTAGCTCGGTTTGGTGCATATTGTTCTGCATTTACTGTTTTTTGCAGAGAAGCTTCAAAAAAGGAAGGTGTTTATGGGGACATAATGGGTGATATTCTGATGTTACAAAAAAAGTATTGCAGTACGGACGATCCTATTTTGGCATCGAACTCAGCCGTAGGTGATCCAAATATTGTGAGTAGCAAAGGTGCTCCAAAGAAAAAAAAGAATGACATAAAAGCTATTAGGCGATGTTCTAAATGCAATAGTAGAACTCATAATGCAAGGAGTTGTTTGGTTGCGGAAAACGCGCCATCTGAACAAAATGTTGTTATGACGTCGCGGCCAGTAACTGATTCATTCAGCCAAGTTGTGAAGAACAAGAATGGAAAAAGAGGTCGCATTGGGGGAAGTAGTGTGCAAAATAAATGTACGGAACCACCGAACTCTCGTGGCGCTAATGTGACGGCGACTTCTCGCGCGGAAGTTGGAAGCACAAGCATACCCATGCCTGCAGTGTATGGATTGCACCCCGTGTTGCCAGTGGTACAACCGGTGCAGCATCCAATGCACTTACAACCGGTAATCCCATTATATCCAACGACAGTTGCAGAAAATTCGGGTTCGTGTTTCGGTAGGCTACAACGACCGATGAACAATGGTGGTACTTGA 2598 0.4069 MENTDHYDSNYYRYRDSGTSDSESENDSNSVSSAYQSSSDGDGDGDSHNEKFHEFDAVVGDRILKIDALTADEIRAMEFGTVDEANLFYFKYAKCKGFAIRKSDVRRRSTGGGQTIIMRQFVCNKRGLRDTKHLRRLDRKREHRPTTRTNCPARLRVHYNPQKGSYVVSCFEEAHNHELTPSRFIHLHPIYREITAADRAQIDGLQSNGIRTCHIMGYMVAQKGGHDRVGFTKKDLYNYFDSKMRATIKDGDVAAAINYLNVKSSTDPMLYGKYAVGTDGRMKSLFWADGSSRSDYFCFGDVIAFDTTYKKNKYNYPLVIFSGCNHHSQTVIFGAALVSDETTETYKWLLECFLECMENKYPEAVVTDGDGAMRESIKQVFPDATHRLCAWHLNKNATENVKNSEFLKDFQKAMYSNFTKDQFEEFWSKTIKENGLEGNPWVQKTYENRSLWATAYLREKFFARIRTTSQCEAVNAIIKSYVRKKGCIFEFMHNFDQAMRCYRNNELIADFKSMFSEPVMTTQLRALESHAAKVYTTEIFKEVRDEIVKAGSLIVKERLFHNGFKTYRFTKYCCDNYDVEVVYDGETLQCECRLWDSRGIPCSHMFGVMKEEHVSLIPTGLILSRWTKDAKIQYLNMNCNGSDDPNMIELARFGAYCSAFTVFCREASKKEGVYGDIMGDILMLQKKYCSTDDPILASNSAVGDPNIVSSKGAPKKKKNDIKAIRRCSKCNSRTHNARSCLVAENAPSEQNVVMTSRPVTDSFSQVVKNKNGKRGRIGGSSVQNKCTEPPNSRGANVTATSRAEVGSTSIPMPAVYGLHPVLPVVQPVQHPMHLQPVIPLYPTTVAENSGSCFGRLQRPMNNGGT 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07169 865 SMART 26again6 588 615 IPR006564 GO:0008270
Vivi3g07169 865 PANTHER OS01G0519700 PROTEIN 74 757 - -
Vivi3g07169 865 Pfam FAR1 DNA-binding domain 88 180 IPR004330 -
Vivi3g07169 865 MobiDBLite consensus disorder prediction 777 796 - -
Vivi3g07169 865 MobiDBLite consensus disorder prediction 23 42 - -
Vivi3g07169 865 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g07169 865 Pfam SWIM zinc finger 580 607 IPR007527 GO:0008270
Vivi3g07169 865 ProSiteProfiles Zinc finger SWIM-type profile. 577 613 IPR007527 GO:0008270
Vivi3g07169 865 MobiDBLite consensus disorder prediction 1 50 - -
Vivi3g07169 865 Pfam MULE transposase domain 302 396 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07169 Vivi-Chr3 199742212 199747132 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g07169 MULE 6.5e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07169 - - vvo:131620026 1527.69