Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07165 ATGAGTATGTTAGGCCTAAGAGACCTAGTTCTCATAGCTCCATCACCTTCATCTCTTCACCATCATCAACAACAGCAACAACATCAACAACACAATCATCAAAACCAACCCATTTCATCAGATCACAATTCATCAGCTTCCTTAAGTGTCGGTTTTGGAATTTTCCCACTTCTTACCGCCACACCATGCATGCCACAACCACAACAACAACCAAACCAGTCTCAAAACAATGAAGCTCAAGAAAATAACAATTTTTGGAACCTTAGGATGTGTCCAGAACCAAAAAAAGTGATAACTGATGATAATGATGATGAGAATCATAATAATCATAATGATAGTAATAACAAGATGGTGATGATGGAGAGTGAAGAGAATGGTGTGTATGGTTCTGAGTATAGAGTGTGTCATGATTGTGGCAATAGAGCGAAGAAAGATTGTGTTTTTAGGAGATGTAGGACTTGTTGTAAGGGACGTGGTTATGATTGTAGTACTCATTTGAAGAGTACTTGGATTCCTTCGACTCGTCGGAGGGAGCGAGAAGGAGAGATTGTTGTTGGTGGCGGCGGTGGTGGTGGTTATGGTAGTGGTGGTGAGGGTTGTTCTGGTGTTAAGAGACCAAAGATTTTGTTAGGGTCTTCACAAAATGGTGCTGCTACTTCTCATAGTTCGAATTCTAATGGTGCTACTCCAAAGAGTTTTGCTAATAGCTCTCGTCATCAAGATGCTAGTTTCAAAGAGGCATTACCAGGTCAAGTTCATGCACCTGCTGTATTCAAATGCCATAGAGTAACTGCCATTGGAAATGGAGAAGATGAGTTTGCTTATTTGGCAACGGTTCATATTAGTGGCCATGTGTTTAAAGGGTTTCTCTATGATCATGGAGTTGATGGGAAAAATCCAATGCCTTGTGTTTCTGAACTTCAATTGGGGAACAATTGTAGTGGAAAAAATGGTGAATGTTCTTCTGGAATTGGTGTTCAAAGTAATAATGCTTACCCTGCTTCTGCTAGCTAG 1014 0.4043 MSMLGLRDLVLIAPSPSSLHHHQQQQQHQQHNHQNQPISSDHNSSASLSVGFGIFPLLTATPCMPQPQQQPNQSQNNEAQENNNFWNLRMCPEPKKVITDDNDDENHNNHNDSNNKMVMMESEENGVYGSEYRVCHDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREGEIVVGGGGGGGYGSGGEGCSGVKRPKILLGSSQNGAATSHSSNSNGATPKSFANSSRHQDASFKEALPGQVHAPAVFKCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKNPMPCVSELQLGNNCSGKNGECSSGIGVQSNNAYPASAS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07165 337 NCBIfam putative zinc finger domain, LRP1 type 134 176 IPR006510 -
Vivi3g07165 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 327 IPR007818 GO:0003700|GO:0006355
Vivi3g07165 337 MobiDBLite consensus disorder prediction 213 242 - -
Vivi3g07165 337 Pfam Domain of unknown function (DUF702) 133 296 - -
Vivi3g07165 337 MobiDBLite consensus disorder prediction 17 46 - -
Vivi3g07165 337 NCBIfam LRP1 C-terminal domain 248 295 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07165 Vivi-Chr3 199502179 199506924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07165 1 323 C2H2 Transcription Factor Family AT5G12330 42.727 8.24e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi3g07165 DUF702 6.5e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07165 - - gmx:100806835 393.275