Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07093 ATGAATGAAAAACAAGAAACCAAAGACCAAAACCCTCCAACATCACAAGACTCACAAAAGAAACAACAAACCATCACCATCAACACAACAACAAATGAGAGACTAAAAAGAGATGAATGGAGTGAAGGAGCAGTGACAACACTTCTTGAGTCCTATGAATCAAAATGGATCCTTAGAAACCGAGCAAAACTCAAGGGACAAGATTGGGAGGATGTTGCGAAACATGTTTCGTCGCGGTCGAATTCGACTAAGTCCCCGAAGACACAAACTCAGTGTAAGAATAAGATTGAGTCCATGAAGAAAAGGTATAGATCGGAGTCGGCTAGCTCGGATGTCTCGGCTTGGCCTTTGTATTCTAGGCTTGATGTTCTTCTTCGTGGGACGGGGCAATTAGCTACGAATGTTGCTACGAAATTGCTACAAGTAAGTAGTAATAATAATAATAATAATAATAATAATAATAATATTAGTAATCATGGTTTGGTTTTGTTGGAACCTTCACAACAAGGGATTGATGAAGCTAATCAGCTACCAGCTCCTATTAGTGTTGCTAATCAACCAATAATTGCAACTGCTCAAAACTCACATGGATCAAATGGGTTTGATAAATTAGCTAAGGAAGATGAATTAGAAACTAAGTCATCTGATCATGCACCTAACAAGAATCCAATGGAAACCGATAGTAGCACGCCCGCGCTTTACAGCGAACAAGACGAACAAAGATGCAAGAAGCGGAGAATGAGATCGGAGAACAACAACAATAACAAGAGGCAAAAGAAAGAAGCAATAGGAATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTTGTTGTAAGGTCAGAGCAAACAAGAATGGACACATTGAAAGAGATAGAGAAGATGAGAGTAGAAGCTGAGGCAAAGAGAGGGGAAATGGAGATCAAGAGGACTGAAATTATTGCTAATACACAACTTGAGATTGCTAGGATCTTTGCAAATGTTAATAATAAAGATAAAGATGTTGATTCATCATTGAGAATTGGAAGAAGTTGA 1029 0.3878 MNEKQETKDQNPPTSQDSQKKQQTITINTTTNERLKRDEWSEGAVTTLLESYESKWILRNRAKLKGQDWEDVAKHVSSRSNSTKSPKTQTQCKNKIESMKKRYRSESASSDVSAWPLYSRLDVLLRGTGQLATNVATKLLQVSSNNNNNNNNNNNISNHGLVLLEPSQQGIDEANQLPAPISVANQPIIATAQNSHGSNGFDKLAKEDELETKSSDHAPNKNPMETDSSTPALYSEQDEQRCKKRRMRSENNNNNKRQKKEAIGIAESIRWLAEVVVRSEQTRMDTLKEIEKMRVEAEAKRGEMEIKRTEIIANTQLEIARIFANVNNKDKDVDSSLRIGRS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07093 342 FunFam Trihelix transcription factor ASIL2 40 105 - -
Vivi3g07093 342 Gene3D - 40 105 - -
Vivi3g07093 342 MobiDBLite consensus disorder prediction 208 259 - -
Vivi3g07093 342 MobiDBLite consensus disorder prediction 237 259 - -
Vivi3g07093 342 Pfam Myb/SANT-like DNA-binding domain 37 123 IPR044822 -
Vivi3g07093 342 MobiDBLite consensus disorder prediction 221 236 - -
Vivi3g07093 342 Coils Coil 287 307 - -
Vivi3g07093 342 MobiDBLite consensus disorder prediction 7 31 - -
Vivi3g07093 342 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 17 326 IPR044823 -
Vivi3g07093 342 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07093 Vivi-Chr3 199290117 199292019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07093 36 133 Trihelix Transcription Factor Family AT3G14180 35.294 2.46e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi3g07093 Myb_DNA-bind_4 2.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07093 - - vvo:131657107 605.905