Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi3g07091 | ATGGAAGAACCCATGCTTACCGACGAATTACCAAAATTCAGTGACATCAGACGCTATTTCTGCCCTTACTGCAACATCTGCAGGTCCAAAAAAACCCTAATCACCTCCCACATCAATTCCCAACACAAGGAAGAGTTAGAGAAAGCAAAAGATGAATCTCAACATGAACATGAAGCAGAGGGTGCTTTGAAAGCTAATACATGTGAGGAGTGTGGTGCTAGTTTCAAAAAGCATGCTTATTTATTGCAGCATATGCAAAGCCATTCTCTTGAGAGGCCGTATGTATGTAACCTTGAGGATTGTAATGCGAGTTACAGAAGAAAGGACCATTTGAATCGTCACCTTCTACAACATCAAGGGAAAACTTTCAAATGTCCTATTGAGAATTGCAAGAGTGATTTCTCTTTGCAGGGCAATTTGAAAAGACATATTGATGAGATCCATGATGAAAATTCTACACCTGCTAGGAATGGTGAAACTCAGAAGCAGCTTCTATGTCCTGAAATTGGCTGCGGAAAGGTTTTCAGATATGCGTCACAGCTACAGAAGCATGAAGATTCTCATGTTAAGCTGGACTCAGTTGATGTGATATGCTTAGAGCCAGGTTGCTTGAAACATTTCACCAATTCCAAGTGCCTTAAGGCTCATGTTAAGTCCTGCCATCAATATGTAACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAAAGGCATCTCCGTACACATGAAGCAAGCACTTCATCGGAACCCTTTAAATGTGAATTTGTGGATTGTGACTGCACTTTTTCAACCAAATCTAATCTTCGAAAGCATGAGAAGGCAGTACACTTTGAAGTAAGGCCTTTTGCATGTGGATTTCCTAACTGTGGCATGAGATTTGCTTACAAACACGTGAGAGACAATCATGAAAAGACGGCAAAACATCTTTTTACCCTTGGTGACTTCGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATGTCCTACAGTAGATATGTTGATTAGGAAGAGAGTTACTCCACCTGGTCAATTGGAGAACTTGTTGTTTATGCAGTCTTGTGAGCAAGATGTAGATCATACTCCTGTCTAG | 1119 | 0.412 | MEEPMLTDELPKFSDIRRYFCPYCNICRSKKTLITSHINSQHKEELEKAKDESQHEHEAEGALKANTCEECGASFKKHAYLLQHMQSHSLERPYVCNLEDCNASYRRKDHLNRHLLQHQGKTFKCPIENCKSDFSLQGNLKRHIDEIHDENSTPARNGETQKQLLCPEIGCGKVFRYASQLQKHEDSHVKLDSVDVICLEPGCLKHFTNSKCLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHEASTSSEPFKCEFVDCDCTFSTKSNLRKHEKAVHFEVRPFACGFPNCGMRFAYKHVRDNHEKTAKHLFTLGDFEEADEEFRSRPRGGVKRKCPTVDMLIRKRVTPPGQLENLLFMQSCEQDVDHTPV | 372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi3g07091 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 125 | 148 | IPR013087 | - | |
| Vivi3g07091 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 198 | 221 | IPR013087 | - | |
| Vivi3g07091 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
| Vivi3g07091 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 287 | 311 | IPR013087 | - | |
| Vivi3g07091 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 164 | 193 | IPR013087 | - | |
| Vivi3g07091 | 372 | Gene3D | Classic Zinc Finger | 150 | 222 | - | - | |
| Vivi3g07091 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 93 | IPR013087 | - | |
| Vivi3g07091 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 256 | 279 | IPR013087 | - | |
| Vivi3g07091 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 94 | 123 | IPR013087 | - | |
| Vivi3g07091 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 104 | 167 | IPR036236 | - | |
| Vivi3g07091 | 372 | Gene3D | Classic Zinc Finger | 95 | 121 | - | - | |
| Vivi3g07091 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 166 | 188 | IPR013087 | - | |
| Vivi3g07091 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 118 | IPR036236 | - | |
| Vivi3g07091 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 123 | 153 | IPR013087 | - | |
| Vivi3g07091 | 372 | Pfam | Zinc finger, C2H2 type | 254 | 279 | IPR013087 | - | |
| Vivi3g07091 | 372 | Pfam | Zinc finger, C2H2 type | 67 | 88 | IPR013087 | - | |
| Vivi3g07091 | 372 | Pfam | Zinc finger, C2H2 type | 166 | 188 | IPR013087 | - | |
| Vivi3g07091 | 372 | Pfam | Zinc finger, C2H2 type | 94 | 118 | IPR013087 | - | |
| Vivi3g07091 | 372 | Coils | Coil | 39 | 59 | - | - | |
| Vivi3g07091 | 372 | Gene3D | Classic Zinc Finger | 223 | 311 | - | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 123 | 148 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 224 | 245 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 164 | 188 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 196 | 221 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 19 | 42 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 94 | 118 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 254 | 279 | IPR013087 | - | |
| Vivi3g07091 | 372 | SMART | c2h2final6 | 285 | 311 | IPR013087 | - | |
| Vivi3g07091 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 96 | 118 | IPR013087 | - | |
| Vivi3g07091 | 372 | PANTHER | ZINC FINGER PROTEIN | 10 | 366 | - | - | |
| Vivi3g07091 | 372 | Gene3D | Classic Zinc Finger | 122 | 149 | - | - | |
| Vivi3g07091 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 235 | 293 | IPR036236 | - | |
| Vivi3g07091 | 372 | Gene3D | Classic Zinc Finger | 12 | 94 | - | - | |
| Vivi3g07091 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 254 | 284 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi3g07091 | Vivi-Chr3 | 199154372 | 199156762 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi3g07091 | 90 | 314 | C2H2 Transcription Factor Family | AT1G72050 | 50.725 | 3.50e-96 | 288 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Vivi3g07091 | zf-C2H2 | 0.00024 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi3g07091 | K09191 | - | gmx:100801812 | 589.726 |