Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07053 ATGTATGGGAGAAAAGCTTGCCAACTCGTGAAAGAATTTGCAAGTGGAGAAAAGGGCCAGCTCACACCATTTAATAATGACTTGTTTGACCAAGTAATTTCAGAATGCAGCCAACATCATCTTGAGCTTCAGTCCTTGATAAGGAAGATGCAGGAAGAAGGTTTGGATGTCCAAACAGCTAGAAATGCTGACCACCATGGAGCCCTCATTCATCTATTTGCTATTGTCCGAAATAAACGTTGTCTAACAGCCTATGTGTATAACCGAGCAGAAACAATACGGAACCTGTTATGGAAGATAGGGCCTGTGATTCCTAAAGAAATTGAAGAGAAGCTTAATCATTGGGAGAAAGAGTATTTCAAGAAGCATTCTTCAGCATTGAAAACTTATATGTCAAAAGCACTGGTTGATTTGACTGTGGATATGGTACCACCAAAAGATCCATATATTCAAGTAAGGGTACTTGAAGACATAAGAGAAGGCATTGTACTTAGTGATAATAAGAATCCCAATTTTGCCCGACATTCCATGCACTTTCTGAAGCGAACTGATGCAGAGAAATATATCTCACGGGGCTTAATGGAAGAGCTCACTGGTTGA 600 0.4 MYGRKACQLVKEFASGEKGQLTPFNNDLFDQVISECSQHHLELQSLIRKMQEEGLDVQTARNADHHGALIHLFAIVRNKRCLTAYVYNRAETIRNLLWKIGPVIPKEIEEKLNHWEKEYFKKHSSALKTYMSKALVDLTVDMVPPKDPYIQVRVLEDIREGIVLSDNKNPNFARHSMHFLKRTDAEKYISRGLMEELTG 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07053 199 CDD GINS_B_Psf1 148 197 - -
Vivi3g07053 199 Gene3D - 1 134 - -
Vivi3g07053 199 CDD GINS_A_psf1 3 133 IPR005339 GO:0000811|GO:0006260
Vivi3g07053 199 Pfam GINS complex protein 65 117 IPR021151 -
Vivi3g07053 199 PANTHER PARTNER OF SLD5 1 198 IPR005339 GO:0000811|GO:0006260
Vivi3g07053 199 SUPERFAMILY GINS helical bundle-like 1 146 IPR036224 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07053 Vivi-Chr3 198697903 198700922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07053 1 199 Core DNA Replication Machinery Family AT1G80190 69.802 1.87e-103 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07053 K10732 - qsa:O6P43_027860 332.028