Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07046 ATGTTGAAGATGAAAGAAAAATTATGTGGTCACTATCTCTGTGAGTTTTCTTCCGAGGAATATGAAGTTGCTGAAGCACTTATTTTACTGCAAAAACAAGTCCAAAAAGTGAATGAGAAAAAGTTGAAAATAACTTTTGGTGGCAAACCAATTTATGAAAGAAACAACATCAACAATGTTCAACCAATGCTACCGATCAATATCCCTAATGTTGAATACAATCCTCCCGATATACCGAATATTCACGGTGTACCGAACAATAGGATTCTTGTATGTTGCAAACCATTCGAGAAAAAATTAACATCTAGTGATTTAGACGTAAGCCAAAATAGATTACTTTTGAAGAAAAATCATGTTAAAACATATTTTCTACCTTTGTTGAAAAGAGAGGAAGAAGTTGACAAAGGAATAAATGTCGTTGTATTTGACACGCAAGGAAAAACATTTAACACGATGTTCAAATTCTGGAGTGATAAATATTATGTCTTCAATGGAGTTGGATGGCAGAAATTCTTCAAAGAACATGATTTAAAAGCGGATCAAGATTTTATTACGGTGTGGATGTTTCGTCATTCTGAAATCAATAATTTATGTTTTGCTGTTAGTTTAAGAAGAGTGGAAGCTTAA 627 0.3254 MLKMKEKLCGHYLCEFSSEEYEVAEALILLQKQVQKVNEKKLKITFGGKPIYERNNINNVQPMLPINIPNVEYNPPDIPNIHGVPNNRILVCCKPFEKKLTSSDLDVSQNRLLLKKNHVKTYFLPLLKREEEVDKGINVVVFDTQGKTFNTMFKFWSDKYYVFNGVGWQKFFKEHDLKADQDFITVWMFRHSEINNLCFAVSLRRVEA 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07046 208 Gene3D - 96 208 IPR015300 -
Vivi3g07046 208 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 91 203 IPR005508 GO:0003677
Vivi3g07046 208 CDD B3_DNA 96 205 IPR003340 GO:0003677
Vivi3g07046 208 SUPERFAMILY DNA-binding pseudobarrel domain 96 199 IPR015300 -
Vivi3g07046 208 Pfam B3 DNA binding domain 96 187 IPR003340 GO:0003677
Vivi3g07046 208 SMART B3_2 96 207 IPR003340 GO:0003677
Vivi3g07046 208 ProSiteProfiles B3 DNA-binding domain profile. 97 207 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07046 Vivi-Chr3 198647364 198647990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07046 21 201 B3 DNA Binding Superfamily AT4G03170 34.010 7.10e-23 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g07046 B3 2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07046 - - vvo:131659699 433.335