Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07027 ATGGCATCAATGTCAGCATCTGGTTCATGGAGTGGTAAGGAGAACAAAGCATTTGAAAGGGCTTTGGCTGTTTTTGATAAGGACAGTCCTGATCGTTGGTCCAACGTTGCTAAAGCTGTTGGTGGAGGAAAAACTGCTGAAGATGTCAAGAGACACTATGAACTTCTTGTTAGGGATATTAGGCACATTGAATCAGGTCAAGTTCCATTCCCAAATTACAACAACAATGCTAGCTAA 237 0.4177 MASMSASGSWSGKENKAFERALAVFDKDSPDRWSNVAKAVGGGKTAEDVKRHYELLVRDIRHIESGQVPFPNYNNNAS 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07027 78 CDD SANT 9 57 IPR001005 -
Vivi3g07027 78 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 76 IPR044636 GO:0003700
Vivi3g07027 78 Gene3D - 2 70 - -
Vivi3g07027 78 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Vivi3g07027 78 ProSiteProfiles SANT domain profile. 5 61 IPR017884 -
Vivi3g07027 78 SMART sant 6 59 IPR001005 -
Vivi3g07027 78 SUPERFAMILY Homeodomain-like 8 65 IPR009057 -
Vivi3g07027 78 FunFam Transcription factor SRM1 2 70 - -
Vivi3g07027 78 Pfam Myb-like DNA-binding domain 8 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07027 Vivi-Chr3 198373682 198374742 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g07027 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07027 - - gmx:100804396 129.028