Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06998 ATGGAGATGCTGGTGAAAAAGGTCGTTTCTGGTGAGTTTATTGATTTGTTTCGGAGGACTAAGCTGGACGTTGAGCTGTTGGAAAAGCTGGAGATTACACTGCTGAGTCTTCAATCTGTACTTTATGATGCTGAGGACAAACAGATCACTAACCCTGCTGTCAAGAAGTGGCTGGAGATGTTGCAAGATGCTGTCTTTCAAGCTGACCAACTGTTCGACGAACTCAACACTGAAGCTTTAAGGTGCCAAGTTGAAGCTGATCAGGTTCTTAAAAAGTTTTTAGATTATTTTAAAAGGTTTAATAAAAAGATCAACTCTAAATTGCAAAAATTATTTGGAAGATTAGAACATTTGAGAAACCAAAATCTTGGATTGAAAGAAGGTGTTTCCAGCTGTGTTAGGAATATAACTCCTACAAGCCCTTTTTTAGGAAATGAATATGATATTAAAGGCAGAGATGATGACAAAAAGAAACTTAAAGAGTTTCTGCTGTCAGAGGGTGGCAATGATGGTGGAAGTAAAATAGGAGTGATTTCCATTGTGGGTATGGGAGGGTTAGGAAAAACAACACTAGCTAAACTCCTTTACCATGACCGTGATGTGAAGGACAAGTTTGATGTTAGAGGGTGGGCACATATTCCAAAAGATTTTGATGCTGTCACTATCACTAAAACCATTCTTAAATCTGTCAATTCAGGAACAATTAGAGAAGCTGACTTAGTTAAACTCGAAGATCAGTTGCAGCAAAGTTTAAGTAACAAAAAGTTTTTGTTAGTACTGGATGATATATGGTATGGAAACTATGTTGGTTGGATTAGTCTAAGTGATATCTTTAATGTTGGACAAATAGGAAGTAAGATCATCATCACAACTCGAGATGTAAGAGTCGCACTACCCAAGCAAAAATCTCTCCATGTCCACCATTTAAGATCTTTGGAAACTGAAGATTCATGGTCTTTACTAGCCAGACATGCATTTGTAGAAAGAAACTGCCAACAACATCCCAGTTTAGAAATAACTGGTAGAGAAATTGCCAAAAAATGTGGCGGTTTACCATTAGCTGCAATAGCACTTGGGGGTATTCTCCGGTTCATGTCACCGGATCGTTGGAGTGATGTGTTAAAAAGTAGTATTTGGGAACATACAAGTGAAGTTGTGGAACCATCTCTACTACTGAGCTATCATTACCTTCCAGCTTCTCTAAAAGGATGCTTTGCTTATTGTGCAATTTTTCCAAAGAACTCAGTCTTAGTGAAAAAGACGATGGTTCAGTTGTGGATTGCAGAAGGCTTAATACCTCAGCCAAAAAATGAGAATAGTTGGGAAAAAGTAGCTGAAGAATTCTTTGATGAGTTAATGTCTAGGTCTCTGATACGTCAACGGTCTATTGATGATAGGTCAGAACAATTCAATGGTGATGAAGATGTTTGGTTTGAAATGCATGACCTCATCAATGATTTAGCTATGGCAGTTTCATCTCCGTATTGCACTATGTTGGACACAAATAAGCCAAATCCAAGGGTGCAATACTTGGCATACGACAGATTTGAATATAACTCAGACGATGAATTTGAAAAATTGCATGGATTAAAAAGACTACGAACTTTTCTACCCATGCCGTTGCAATCTTTAGGGGTTTATGATAATTCTGTATCGTCAAAGTTATTTTCTGATTTGTTGTCAACAATGACACAATTACACGTGTTGTCTCTTTCAAACTCTTTAAATATCACAAAGTTACCCAACTCTATTGGAAATTTGATTTACTTGCGATACTTGAATCTCTCTTACACTGAGATTAAAAGTTTGCCTTCAGAAACGTGCAAGCTTTACAATTTGCAGACGTTGTTGTTGTCATATTGCTATAAACTCGATGAATTGCCAGAAGACATGGGAAAATTGGTGAAGCTACGCCACCTTGACATTAGAGGCACTAAATTGAAGAAAATGCCGGCACAAATGTCCAAATTAGAAAATCTGCAAACATTGTCGTACTTTATTGTGAGCGGCGTTAAGGATGTTGGGTTGAAGATTGAAGATCTTGGAAAATTTCCCCATCTACGAGGAAGCCTTTCCATCTCACAACTTGAAAATGTAATTGACTCATCCCATTCTTCTCAAGCAAACTTGGAGTCGAAGAAAGAAATTGACGAGTTGGAACTAGGATGGTCTTACACTGCTCCTTCAAACTCACAAATACAAAGTGTTGCATTGGAGCGACTGCGCCCGTCGACAAATTTGAAGAGTTTGACCATCTCTGGATTTGGTGGAGACAAATTATCAAATTGGGTGGGAGATTCTTTATTTGTAAACATGGTGTGTTTGAAGATCACAAGGTGTAAAAAAATTTCAGTGCTGCCATCCTTGGGGCAACTCGGTAATCTAAAAGAACTTTTTTTTAGTGAGATGGAATCTGTTAAAAGTGTTGGTACCGTATTCTATGGAAGTGGTTCTTCTTCATTTCAACCATTTGCCTCTTTAGAGACTCTACGCTTTGAATTTATGCCAGAGTGGGAGGAATGGGAGTTGATTGGAGGTACATCTATAGAGTTTCCTAGTCTTATTAGCCTTAGGTTAAGGGACTGTCCAAAACTGAAAGAAAACATACCTGGCAACCTTCCTAAGCTTGAAAGTTTGTCACTTGAAGTTTGTCCCAAACTTGAAGGGATGACACCCAACAATCTTCCTTCTCTTGCGGTCCTTATGTTAGAGGAATGTCCCTTATTGATGGGTTCAAGACAGTCTATTACAAACCCACCATTTGACATATTCAGCCAATTGGTGATTTGTCTCAATTCTCTTCAAAAGTTGAAGTTATACAGAATTCGATCTCTAACATCCTTTCCGATAGACGGCCTTCCCAAAACCTTACGATCTCTCTCTATCTTTTACTGTGAGAATCTGGAGTTCTTTTCTCATGAATCTTTTCACAATTACTCGTCACTTGAGGATTTGCATATATTAAATAGTTGTAATTCAATGACATCATTTACCTTGGGCTCTCTCCCTGTCCTCAAAAGTCTAGATATTAAGAATAGTGAACATTTAAAATCCATATCAATAGCAGAAGATGCATCGGAACCAAATCTAATGTTTCTTAGAAGCATCAGAATACATAGCTGTGATGAACTGGAGTCAGTTTCCTTAAGTCGATTACCCATTCCTAAACTCACTTATTTAAGTTTGCGGAGTTGTGAGAAGTTAAGTTTCATAGAACCAATAAAGACTCTAACTAGCCTTCAAGAAATGCAAATTAATGACCTTCCAAATCTGCAATTTCTACCTGAATCAATGAAGACTCTAACTAGCCTTCAACAAATGACAATTACTGGCCTTCCAAATCTGCAATCGTTTTCCATAGATGATATGCCTATCAATTTGCAGCAACTATTGGTCCGCGAAGTTGGAGGGATTTTGTGGAATACAACTTGGCAACATCTCACTTCTCTTTCAATGCTGCGTATTAAGAGTGATGATATTGTGAAGGGGCTGATGAAAACGCAAGTTCCGTTTCTACCCACTAATCTCGTTTCCTTGGGGATCTTTGAGCTTAAAGATATAGAATGTTTGGATGGGAAGTGGCTTCAACATCTCACCTCTCTCCATAAACTTGTGATTGATCATGCACCCAAGCTTCAGTCGTTGCCAGAAAAGGGGGAATTGCCTTCCTCTCTTGAAGAACTGCATATCAGATATTGTCCGTTGTTGAAAGCAAATTTGCAGAGGAAGAAAGGGAAAGAGTGGAGTAAGATTTCTCACATTCCCTCAATAGTTATAGACTTCAAAACCATCAAATGA 3798 0.3823 MEMLVKKVVSGEFIDLFRRTKLDVELLEKLEITLLSLQSVLYDAEDKQITNPAVKKWLEMLQDAVFQADQLFDELNTEALRCQVEADQVLKKFLDYFKRFNKKINSKLQKLFGRLEHLRNQNLGLKEGVSSCVRNITPTSPFLGNEYDIKGRDDDKKKLKEFLLSEGGNDGGSKIGVISIVGMGGLGKTTLAKLLYHDRDVKDKFDVRGWAHIPKDFDAVTITKTILKSVNSGTIREADLVKLEDQLQQSLSNKKFLLVLDDIWYGNYVGWISLSDIFNVGQIGSKIIITTRDVRVALPKQKSLHVHHLRSLETEDSWSLLARHAFVERNCQQHPSLEITGREIAKKCGGLPLAAIALGGILRFMSPDRWSDVLKSSIWEHTSEVVEPSLLLSYHYLPASLKGCFAYCAIFPKNSVLVKKTMVQLWIAEGLIPQPKNENSWEKVAEEFFDELMSRSLIRQRSIDDRSEQFNGDEDVWFEMHDLINDLAMAVSSPYCTMLDTNKPNPRVQYLAYDRFEYNSDDEFEKLHGLKRLRTFLPMPLQSLGVYDNSVSSKLFSDLLSTMTQLHVLSLSNSLNITKLPNSIGNLIYLRYLNLSYTEIKSLPSETCKLYNLQTLLLSYCYKLDELPEDMGKLVKLRHLDIRGTKLKKMPAQMSKLENLQTLSYFIVSGVKDVGLKIEDLGKFPHLRGSLSISQLENVIDSSHSSQANLESKKEIDELELGWSYTAPSNSQIQSVALERLRPSTNLKSLTISGFGGDKLSNWVGDSLFVNMVCLKITRCKKISVLPSLGQLGNLKELFFSEMESVKSVGTVFYGSGSSSFQPFASLETLRFEFMPEWEEWELIGGTSIEFPSLISLRLRDCPKLKENIPGNLPKLESLSLEVCPKLEGMTPNNLPSLAVLMLEECPLLMGSRQSITNPPFDIFSQLVICLNSLQKLKLYRIRSLTSFPIDGLPKTLRSLSIFYCENLEFFSHESFHNYSSLEDLHILNSCNSMTSFTLGSLPVLKSLDIKNSEHLKSISIAEDASEPNLMFLRSIRIHSCDELESVSLSRLPIPKLTYLSLRSCEKLSFIEPIKTLTSLQEMQINDLPNLQFLPESMKTLTSLQQMTITGLPNLQSFSIDDMPINLQQLLVREVGGILWNTTWQHLTSLSMLRIKSDDIVKGLMKTQVPFLPTNLVSLGIFELKDIECLDGKWLQHLTSLHKLVIDHAPKLQSLPEKGELPSSLEELHIRYCPLLKANLQRKKGKEWSKISHIPSIVIDFKTIK 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06998 1265 Coils Coil 101 121 - -
Vivi3g06998 1265 Gene3D - 394 490 IPR036388 -
Vivi3g06998 1265 Gene3D Ribonuclease Inhibitor 1108 1252 IPR032675 -
Vivi3g06998 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 408 IPR027417 -
Vivi3g06998 1265 Pfam NB-ARC domain 154 394 IPR002182 GO:0043531
Vivi3g06998 1265 SUPERFAMILY L domain-like 930 1251 - -
Vivi3g06998 1265 Gene3D Ribonuclease Inhibitor 538 916 IPR032675 -
Vivi3g06998 1265 FunFam Probable disease resistance protein At1g63360 394 490 - -
Vivi3g06998 1265 Pfam Rx N-terminal domain 24 89 IPR041118 -
Vivi3g06998 1265 PRINTS Disease resistance protein signature 348 362 - -
Vivi3g06998 1265 PRINTS Disease resistance protein signature 177 192 - -
Vivi3g06998 1265 PRINTS Disease resistance protein signature 893 909 - -
Vivi3g06998 1265 PRINTS Disease resistance protein signature 250 264 - -
Vivi3g06998 1265 Gene3D - 311 393 IPR042197 -
Vivi3g06998 1265 Gene3D Ribonuclease Inhibitor 917 1099 IPR032675 -
Vivi3g06998 1265 PANTHER DISEASE RESISTANCE PROTEIN RP 27 876 IPR044974 GO:0006952
Vivi3g06998 1265 Gene3D - 5 114 - -
Vivi3g06998 1265 Gene3D - 140 304 IPR027417 -
Vivi3g06998 1265 Coils Coil 27 47 - -
Vivi3g06998 1265 SUPERFAMILY L domain-like 480 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06998 Vivi-Chr3 198192656 198208894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06998 524 663 WRKY Transcription Factor Family AT4G12020 33.333 7.61e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06998 - - vvo:131593262 1981.07