Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06890 ATGGCTGCAATAGGAAGTGCTTTCCTCTCTGCAACTGTTCAGACCTTACTTGACAAACTTGCTTCCAAAGAGTTTCTTGATTACATCACAAACACCAAGCTCGATGTCTCACTCTTGAAACAGTTAAGGCTAACACTACTCACTCTTCAACCTGTGCTAGATGCTGCGGAGGAGAAGCAGATTAGCACTCCTTCTGTCAAAGACTGGCTTGATGGCTTGAAAGATGCTGTCTATGATGCTGAAGATCTGCTTAACCAAATTAGCTATGATTCCCTTCGATGCAAGATGGAGAACACGCAACCTGCAAGCAAAACTAATCAGGTCTGGAACTTCCTTTCTTCTCCTTTTAAAAACATCTATGGAGAGATCAATTCCCAGATGAAAGACATGTGTGAAACCCTCAAACTTTTTGCTGATAATAAAGATATACTTAGTTTGCAAACTAAAAGTGTCAGAGTTTCTCATAAAACACCTTCAAATCCTATGTTCAATGAATCTGTCATGGTTGGTAGGAAAGATGACCTAGAGAAAGTAATAAACATGTTGCTATTAGAAAGCAATACTAATATGGGCATAGTTGCAATTGTAGGCATGGGAGGCCTCGGAAAAACAACACTTGCACAACTTGTTTGTAATGATGAAAAAGTTCAAAACCACTTTGATCTCACAGCATGGGCTTGTGTATCAGAGGATTTTGATATCCTTAATGTAACCAAAACTCTCCTTGAATCTGTCACTAAAACACCATCAGGAACCGACAATCTTGATTTACTTCGAGTTGAGTTAAAGAAAAATTTAAGGGATAGGAGATTTTTTATTGTGTTGGATGACTTATGGAATGACAGTTGTTCTGATTGGGATGAACTTGTATCTCCGTTGATTTATGGAAAAAATGGAAGCAGGGTGATCATCACAACACGCCACAAAAAAGTGGCAGATGCTGCACGCACATTTCCTATTTTTGAGTTAGATCCTCTATCAGAAGAAGACATTTGGTCTTTACTCTCCAAACGTGCATTTGGAAGTGATACTGCATTCAACAACTTTTCTGAAACTAAATGCCGAAACCTAGAACCAATTGGCAGGAAGATTGCAAAAAAGTGTGGTGGATTGCCAATAGCTGCGAAATCACTTGGAGGACTGTTGCGTTCAAAAGTAGATACTGAAGAGTGGATTGAAGTTCTGAACAACGACATATGGAACTTAAAGGATGATAATATTCTGCCTGCATTGCGCCTGAGTTATCAATACCTTTCCTCTCAATTGAAAAGATGTTTTTCCTATTGCTCTATTTTTCCAAAGGACTATCCACTTGATAGGAAGCAATTGGTTTTGTTGTGGATGGCAGAAGGCTTCCTTGATCATTCTCATGACAAAAAAACTATGGAAGAAGTAGGTGATGAGTGTTTTACTGAATTGTTATCCAGATCGTTGATTCAACAATTGCATGATGATTCTAGAGGACATAAATTTGTCTTGCATGACCTTGTTAATGATTTAGCTACGGTCGTATCTGAAAAAAGTTGTTACAGACTTGAATTTGGTGCTAAGAGCTATGAAAATGTTCGCCACTTGTCATATAATAAAGAAACATATGATATTTTTAAGAAGTTTAAGACTTTCGACAAATTCAAACGCTTGAGAAGCTTCCTTGCCATTGACTTTGGATGGTTAGAATATAATTTATCAAGAAATACGGTCAATTATTTGCTACCCACATTTGGAAGGTTGCGGGTGTTATCGTTATCAAGATATAGAAACATCACCATGCTACCCGTTACAATTGGCAACTTAGTGCAGTTGCGCTATCTAGATCTCTCTTACACGAATATCGCAAGCTTGCCTGACACCATATGCAACCTCTACTACTTGCAAACCTTGATTTTATCTTGCTGCTCAAAACTCACAGAATTTCCTAAAAATGTTGGAAAATTAAGTAATTTGCGTCATCTTTATATTGATATGACAAGCATAATAGAGATGCCGAAGCAAATTGCTGAACTAGAAAACCTTCAAACTCTAACTGTTTTTGTAGTTGGCAAGAAAAATATTGGTTTAAGTGTTAGAGAGCTTGGGAAGTTTCCTAAGCTACGGGGAAAGTTACTCATTAAGAACCTGCAAAATGTCAATGATGTCATGGAGGTAAGTGGTACCAACTTGAAGAGCAAATAA 2172 0.3771 MAAIGSAFLSATVQTLLDKLASKEFLDYITNTKLDVSLLKQLRLTLLTLQPVLDAAEEKQISTPSVKDWLDGLKDAVYDAEDLLNQISYDSLRCKMENTQPASKTNQVWNFLSSPFKNIYGEINSQMKDMCETLKLFADNKDILSLQTKSVRVSHKTPSNPMFNESVMVGRKDDLEKVINMLLLESNTNMGIVAIVGMGGLGKTTLAQLVCNDEKVQNHFDLTAWACVSEDFDILNVTKTLLESVTKTPSGTDNLDLLRVELKKNLRDRRFFIVLDDLWNDSCSDWDELVSPLIYGKNGSRVIITTRHKKVADAARTFPIFELDPLSEEDIWSLLSKRAFGSDTAFNNFSETKCRNLEPIGRKIAKKCGGLPIAAKSLGGLLRSKVDTEEWIEVLNNDIWNLKDDNILPALRLSYQYLSSQLKRCFSYCSIFPKDYPLDRKQLVLLWMAEGFLDHSHDKKTMEEVGDECFTELLSRSLIQQLHDDSRGHKFVLHDLVNDLATVVSEKSCYRLEFGAKSYENVRHLSYNKETYDIFKKFKTFDKFKRLRSFLAIDFGWLEYNLSRNTVNYLLPTFGRLRVLSLSRYRNITMLPVTIGNLVQLRYLDLSYTNIASLPDTICNLYYLQTLILSCCSKLTEFPKNVGKLSNLRHLYIDMTSIIEMPKQIAELENLQTLTVFVVGKKNIGLSVRELGKFPKLRGKLLIKNLQNVNDVMEVSGTNLKSK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06890 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 429 IPR027417 -
Vivi3g06890 723 FunFam Probable disease resistance protein At1g63360 415 503 - -
Vivi3g06890 723 PRINTS Disease resistance protein signature 368 382 - -
Vivi3g06890 723 PRINTS Disease resistance protein signature 192 207 - -
Vivi3g06890 723 PRINTS Disease resistance protein signature 265 279 - -
Vivi3g06890 723 PRINTS Disease resistance protein signature 596 612 - -
Vivi3g06890 723 Gene3D - 420 502 IPR036388 -
Vivi3g06890 723 Gene3D - 148 318 IPR027417 -
Vivi3g06890 723 PANTHER DISEASE RESISTANCE PROTEIN RP 53 707 IPR044974 GO:0006952
Vivi3g06890 723 SUPERFAMILY L domain-like 493 704 - -
Vivi3g06890 723 FunFam Probable disease resistance protein At1g61300 150 317 - -
Vivi3g06890 723 Gene3D Ribonuclease Inhibitor 506 722 IPR032675 -
Vivi3g06890 723 Pfam NB-ARC domain 172 424 IPR002182 GO:0043531
Vivi3g06890 723 Gene3D - 326 419 IPR042197 -
Vivi3g06890 723 Gene3D - 12 128 - -
Vivi3g06890 723 Pfam Rx N-terminal domain 8 100 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06890 Vivi-Chr3 195499370 195506639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06890 174 543 WRKY Transcription Factor Family AT5G45050 24.093 4.83e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06890 - - vvo:131659657 1414.44