Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06887 ATGGCTGCAATAGGAAGTGCTTTCCTCTCTGCAACTGTTCAGACCTTACTTGATAAACTTGTTTCCAAAGAGTTTCTTGATTACATAAAAAGCACCAAGCTCGATGTCTCACTCTTGAAACAGTTAAGGCTAACACTACTCACTCTTCAACCTGTGCTAGATGCTGCGGAGGAGAAGCAGATCAACACTCCTTCTGTCAAAGACTGGCTTGATGGCTTGAAAGATGCTGTCTATGATGCTGAAGATCTGCTTAACCAAATTAGCTATGATTCCCTTCGATGCAAGATGGAGAACACGCAACGTGCAAGCAAAACTAATCAGGTCTGGAACTTCCTTTCTTCTCCTTTTAAAAACATCTATGGAGAGATCAATTCCCAGATGAAAGATATGTGTGAAACCCTCAAACTTTTTGCTGATAATAAAGATATACTTAGTTTGCAAACTAAAAGTGTCAGAGTTTCTCATAGAACACCTTCAAATCCTATGTTCGATGAACCTGTCATGGTTGGTAGGAAAGATGACCTAGAGAAAGTAATAAACATGTTGCTATCAGAAAGCAATACTAATATGGGCATAGTTGCAATTGTAGGCATGGGAGGCCTCGGAAAAACAACACTTGCACAACTTGTTTGTAATGATGAAAAAGTTCAAAACCACTTTGATCTCACAGCATGGGCTTGTGTATCAGAGGATTTTGATATCCTTAATGTAACCAAAACTCTCCTTGAATCTGTCACTAAAACACCATCAGGAACCGACAATCTTGATTTACTTCGAGTTGAGTTAAAGAAAAAATTAAGGGATAGGAGATTTTTCATTGTGTTGGATGACTTATGGAATGACAGTTGTTCTGATTGGGATGAACTTGTATCTCCGTTGATTTATGGAAAAAATGGAAGCAGGGTGATCATCACAACACGCCACAAAAAAGTGGCAGATGCTGCACGCACATTTCCTATTTTTGAGTTAGATCCTCTATCAGAAGAAGACATTTGGTCTTTACTCTCCAAACGTGCATTTGGAAGTGGTGACTTTTCTGAAACTCAATGCCGAAACCTAGAACCAATTGGCAGGAAGATTGCAAAAAAGTGTGGTGGATTGCCAATAGCTGCGAAATCACTTGGAGGACTGTTGCGTTCAAAAGTAGATACTGAAGAGTGGATTGAAGTTCTGAACAACGACATATGGAACTTAAAGGATGATAATATTCTGCCTGCATTGCGCCTGAGTTATCAATACCTTTCCTCTCAATTGAAAAGATGTTTTTCCTATTGCTCTATTTTTCCAAAGGACTATCCACTTGATAGGAAGCAATTGGTTTTGTTGTGGATGGCAGAAGGCTTCCTTGATCATTCTCATGACAAAAAAACTATGGAAGAAGTAGGTGATGAGTGTTTTACTGAATTGTTATCCAGATCGTTGATTCAACAATTGCATGATGATTCTAGAGGACATAAATTTGTCTTGCATGACCTTGTTAATGATTTAGCTACAGTCGTATCTGAAAAAAGTTGTTACAGACTTGAATTTGGTGCTAAGAGCTATGAAAATGTTCGCCACTTGTCATATAATAAAGAAACATATGATATTTTTAAGAAGTTTAAGACTTTCGACAAATTCAAACGCTTGAGAAGCTTCCTTGCCATTGACTTTGGATGGTTAGAATATAATTTATCAAGAAATACGGTCAATTATTTGCTACCCACATTTGGAAGGTTGCGGGTGTTATCGTTATCAAGATATAGAAACATCACCATGCTACCCGTTACAATTGGCAACTTAGTGCAGTTGCGCTATCTAGATCTCTCTTACACGAATATCGCAAGCTTGCCTGACACCATATGCAACCTCTACTACTTGCAAACCTTGATTTTATCTTGCTGCTCAAAACTCACAGAATTTCCTGAAAATGTTGGAAAATTAAGTAATTTGCGTCATCTTTATATTGATATGACAAGCATAATAGAGATGCCGAAGCAAATTGCTGAACTAGAAAACCTTCAAACTCTAACTCTTTTTGTAGTAGGCAAGGAAAATATTGGTTTAAGTGTTAGTGAGCTTGGGAAGTTTCCTAAGCTACGGGGAAAGTTACTCATCAAGAACCTGCAAAATGTCAATGATGTCATGGAGGTAAGTGGTACCAACTTGAAGAGCAAAGAACATATTGATGAACTGACGCTACATTGGGGCAAGGAAACTGATGACACACTTAATGAAAAAAATGTGCTTGATATGTTAGAACCATCTACAAACCTAGAAAAACTGAGCATTGGATCATATGGTGGGACAAGTTTTCCAAGTTGGTTTGGAGATCCTTCGTTTTCTAACATGGTGTCTCTCAGCATTAGTACTTGTGTGAATTGCATGACACTTCCATCACTAGGGCAGCTACCTTCTCTCAAGGATTTGCAGATTATTAGAATGACATCTATTGTGGCAATTGGGCAAGAGTTCTATGGCATGGCAGCAGGAGGTTCCAATTCTTCGTTCCAACCATTTCAATCCCTTGAGAATTTGGAATTTTCGTCCATGGGAAATTGGAAGGAGTGGTGTCCTTTTCCAGACAACATGTTTCCTTTTCCCCGTCTCAAAACTCTGAGGTTAGTAAGGTGTCCCAAATTGAAAGGACATTTACCTAGTCATCTTCCTTCCTTAGAAGAGATTGAAATATATGATTGTGATCATCTCTTGGCAACACCACCTACTCAACATTGGCTCTCCTCAATAAAAAAGATTCGTATTGTGGAAGATTCAGACTCAATAAGCAATACTGAAAGGAACCAATACTCATTGCTCGAGAGTGATTCTCCATGTCTGCTGCAAACAATAGACATATGGAGCCGTCATATGCTAAAATCTGTACCTAAAATGATTATAAACAGCACCTCTCTTCGAGAATTGGATCTCAATGGTATTAGTTCTCTCACTACGATTCCAACGAATGGCTTACCCACTTCTTTGCAATCACTTTCTATTACAAATTGTGAGAACTTAGCATTCTTTCCTCCTGAAATGTGGAGCAATTACACATCCCTTGTGACTCTTACATTAGAAGACTGCAATGCACTTACCTCCGTCCCATTGAATTGTTTTCCTATGCTCCAAAATTTTTCCATCTATGATTGTAACAGTTTGGAATCTATTTTTATTTCAGAAACTTCTTCCTGTAGCTCTTCAACCCTCCAATCTTTTCATGTCCGTGATTGCGAGGAACTTAGATCACTACCTCAACGGATGGGCACCCTCACCGCTCTTGAAAAGATATTTCTACGCAATCTTCCAAAATTGAATTTATCATTATGTGAAGGAGTTTTCCTACCTCCCAATTTACAATCAATTGTGGTAGATTCTGTGAGGATAACAAAGCCGGTAACAGAGTGGGGTTTCCAATGTCTCACTGCTCTTTCATCATTGCAAATTATGGGTGATGATATTGTGAACATATTGCTCAAAGAGCCGTTGTTGCCCATTTCCCTTGTGTCTTTATATATCGTTGGTCTCTCTGAAATGAAATGCTTAGAAGGAAATAGACTTCGACACCTCTCCTCTCTAGAATTCCTTTTCTTTGCTGATTGTCCAGGGCTTGTATCATTGCCAGAAAAAGCCTTCCCCTCCTCGCTGAAATCACTTGATTTTTATGAGTGTACAAGACTAAAGTCATTCCCAGAAAACAGTCTTCCTACCTCTCTTGAGGTACTGTGCATTTCTAATTGCCCATTGTTAGAAGAAAGGTATAAAAGGAAGGAACATTGGTCCAAAATATCTCACATCCCAGTCATAAGAATAAATGAGCAAGTCACAATATGA 3807 0.3864 MAAIGSAFLSATVQTLLDKLVSKEFLDYIKSTKLDVSLLKQLRLTLLTLQPVLDAAEEKQINTPSVKDWLDGLKDAVYDAEDLLNQISYDSLRCKMENTQRASKTNQVWNFLSSPFKNIYGEINSQMKDMCETLKLFADNKDILSLQTKSVRVSHRTPSNPMFDEPVMVGRKDDLEKVINMLLSESNTNMGIVAIVGMGGLGKTTLAQLVCNDEKVQNHFDLTAWACVSEDFDILNVTKTLLESVTKTPSGTDNLDLLRVELKKKLRDRRFFIVLDDLWNDSCSDWDELVSPLIYGKNGSRVIITTRHKKVADAARTFPIFELDPLSEEDIWSLLSKRAFGSGDFSETQCRNLEPIGRKIAKKCGGLPIAAKSLGGLLRSKVDTEEWIEVLNNDIWNLKDDNILPALRLSYQYLSSQLKRCFSYCSIFPKDYPLDRKQLVLLWMAEGFLDHSHDKKTMEEVGDECFTELLSRSLIQQLHDDSRGHKFVLHDLVNDLATVVSEKSCYRLEFGAKSYENVRHLSYNKETYDIFKKFKTFDKFKRLRSFLAIDFGWLEYNLSRNTVNYLLPTFGRLRVLSLSRYRNITMLPVTIGNLVQLRYLDLSYTNIASLPDTICNLYYLQTLILSCCSKLTEFPENVGKLSNLRHLYIDMTSIIEMPKQIAELENLQTLTLFVVGKENIGLSVSELGKFPKLRGKLLIKNLQNVNDVMEVSGTNLKSKEHIDELTLHWGKETDDTLNEKNVLDMLEPSTNLEKLSIGSYGGTSFPSWFGDPSFSNMVSLSISTCVNCMTLPSLGQLPSLKDLQIIRMTSIVAIGQEFYGMAAGGSNSSFQPFQSLENLEFSSMGNWKEWCPFPDNMFPFPRLKTLRLVRCPKLKGHLPSHLPSLEEIEIYDCDHLLATPPTQHWLSSIKKIRIVEDSDSISNTERNQYSLLESDSPCLLQTIDIWSRHMLKSVPKMIINSTSLRELDLNGISSLTTIPTNGLPTSLQSLSITNCENLAFFPPEMWSNYTSLVTLTLEDCNALTSVPLNCFPMLQNFSIYDCNSLESIFISETSSCSSSTLQSFHVRDCEELRSLPQRMGTLTALEKIFLRNLPKLNLSLCEGVFLPPNLQSIVVDSVRITKPVTEWGFQCLTALSSLQIMGDDIVNILLKEPLLPISLVSLYIVGLSEMKCLEGNRLRHLSSLEFLFFADCPGLVSLPEKAFPSSLKSLDFYECTRLKSFPENSLPTSLEVLCISNCPLLEERYKRKEHWSKISHIPVIRINEQVTI 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06887 1268 Gene3D - 12 127 - -
Vivi3g06887 1268 Gene3D - 416 498 IPR036388 -
Vivi3g06887 1268 Gene3D - 325 415 IPR042197 -
Vivi3g06887 1268 Gene3D Ribonuclease Inhibitor 533 932 IPR032675 -
Vivi3g06887 1268 Gene3D - 150 318 IPR027417 -
Vivi3g06887 1268 PANTHER DISEASE RESISTANCE PROTEIN RP 53 894 IPR044974 GO:0006952
Vivi3g06887 1268 FunFam Probable disease resistance protein At1g63360 411 499 - -
Vivi3g06887 1268 SUPERFAMILY L domain-like 938 1248 - -
Vivi3g06887 1268 FunFam Probable disease resistance protein At1g61300 151 317 - -
Vivi3g06887 1268 Gene3D Ribonuclease Inhibitor 934 1100 IPR032675 -
Vivi3g06887 1268 Pfam Rx N-terminal domain 8 101 IPR041118 -
Vivi3g06887 1268 Pfam NB-ARC domain 172 419 IPR002182 GO:0043531
Vivi3g06887 1268 SUPERFAMILY L domain-like 489 914 - -
Vivi3g06887 1268 Gene3D Ribonuclease Inhibitor 1101 1257 IPR032675 -
Vivi3g06887 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 425 IPR027417 -
Vivi3g06887 1268 PRINTS Disease resistance protein signature 192 207 - -
Vivi3g06887 1268 PRINTS Disease resistance protein signature 265 279 - -
Vivi3g06887 1268 PRINTS Disease resistance protein signature 364 378 - -
Vivi3g06887 1268 PRINTS Disease resistance protein signature 959 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06887 Vivi-Chr3 195310544 195314882 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06887 174 539 WRKY Transcription Factor Family AT5G45050 23.656 2.15e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06887 - - tpra:123915821 1424.84