Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06885 ATGGCCGCAACAGCATTGGTAGGAAGCGCTTTTCTCTCCGCAACAGTTGAAGATTTACTACTGAGGCTCTCTTCATCAGAGTTCATCGATTACATCACAAGCAGCAAGTTGAATCTCCTCAAACTCACAGTATTCGAAACATCGCTTCTCACTCTCAATTCAGTTCTTCCCGATGCAGAGCGGAAGCAGTTCTTCAATCCCGCAGTCAAACAATGGATGGATGATTTGTACGACGCGATCTCAGATGCAGATGATTTGATTGATGAAATCGGTTACGATTTGATGCGATGCAAGGTAGAGAACGCTCAACCTAAACACGATTTTACATTTGATTATAGATTGAAATTTATGAATCTAAGGCTACAACGTTTTGTTCAAAGGATAGATTCCATTGGTTTACAGTCTGTGAATGGTAGGGTTTCTTGTAGAATGCGTTCGAGTTTGGGGTCAAGTTCAGTGTTAAATGAATCTTTCATAGTTGGTAGGGAGGATGATAAAAAGAAATTGATGAATATGTTGTTGTCGGATACTGGTACAAATCTAGACGTGGTTGCTGTTTTGGGTGTTGGAGGGGTTGGTAAAACTACACTTGCTGAACTAGTTTACAATGATAAAAAAGTTAATGAGCATTTTGATTTGAAAATGTGGATTCGTGTGTCGGAAGATTTTGACATTGCGAGAATAATAAGAACTCTACTTGCATCTGTATGTTCATTAATGTACGACGAGAACGACAGTCTTGATTATCTTCGATTTGAGTTAAAGCAGAAGTTGAATTGTAGAAGATTTTTATTTGTTTTGGATGACCTATGGAATGTTGGCTATAATGATTGGCATGAGTTGGTAGCTCCTTTGGTTAATGGAAAATTGGGAAGCAGGGTGATCATCACGACGCGTCAAGAAAAAGTTGCAAAGGTTGTGCATACATTTCCAATTCATAAATTAGAACCTTTGTCAGACGAAGACTGTTGGTCTTTACTTTCCAAGCATGCATTTGGAAGTAAAGTTTATGGTGGCAGTGAATACCCAGATCTTGAAGCAATTGGTAGGAAAGTTGCAAGAAAGTGTCTAGGATTGCCACTAGCTGCCAAAACACTTGGTGGACATTTTTCTTCAACTGTAGATTTAAAGGACTGGATTTCAATTTTGATTAGCAACATATGGAAGATACCAGATAATAATATTCTTCCATCTTTGCTTTTGAGTTATCAATGTCTTCCCTCTCATTTGAAAAGATGTTTTGCCTATTGCTCAGTTTTTCCGAAGGGTTATTCCTTTAATAGGAAGCAGATGATTTTGTTGTGGATGGCAGAAGGCTTCCTTGAACATTGTCAGGATGAAAAAGCACCAGAAGAAGTAGGTGATGACTACTTTGTTGAATTGTTATCGAGATCCTTCATTCAACAGTTGAAAGATGACAGTGAGAGAGAAAAGTTTGTTCTGCATGACCTTCTTTATGATTTAGCCGAGATTGTATCTGGGAAAAGTTGTTGCAAGCTCGAATGCAGTGGCATCATGTCAAAAAAGGTTCAACATTTGTCATATATTCAACACGAGTATGACACTTTCAAGAAGTTTGAGATTTTCCACGATTTTGAAAGCTTGCGAAGCTTCTTGCCTATTTGCATTCGCCGGGGTTTGAATTACTTATCGAGAAAGGTGGTGGATGATTTGCTGCCGACACTCAGAAATTTGCGCGTGCTATCGTTATCACATCACAGAAACTTCACCATGTTACCAGGTTCTATTTATAATTTGTTGCATTTGCGGTATCTCGACCTCTCTCACACTGATATCAAAAGCCTGCCTGAATCAATATGTCACCTGTACTATTTGCAAACCTTAAAGTTATCAATGTGCTTATATCTCACTGAATTGCCGGTAGACATCGGAAAGCTAATTAATTTACGCCACCTTGATATCAGTAACTCTCGCATTAAAAAGATGCCAATGCAAATTGTTCGATTGGAAAATCTTCAGACTCTATCTGTTTTCAGAGTGGGCAAGCAAGAAGTTGGGTTAAGTGTGAGAGAACTTGGGAAGTTTCCTAACATTCAGGGAAAACTTTACATTGGAAATCTGTGTAATGTCATCAATGTCAGTGAAGCATGTGATGCCAACTTGAAGAATAAAGAACTCATTGATGAGTTAGAGTTATGTTGGAAACAAGAAGAAGAACAGTTAGAGTTATTTTGGGAAGAAGAAGAAGAAGAACGACCACATGATTCACAAACACAAACAGTTGTGCTTGATGGGTTGCAACCATCAATAAACTTGAAGAAATTGATCATTGGCAGTTATCGCGGGACAAGTTTTCCAAGTTGGTTGGGAGATTCTTCATTTTCTAACATGGTGTACTTGCGCATATGTTATTGTGAATATTGTGTCACACTTCCATCATTAGGGAAACTACCTTCTCTCATAGATCTAAGTATAGATGGTATGTCGATATTGGAGACAATTGGTCCAGAGTTCTATGGCATGTCAGGTGGAGGTTTTAATTCTTCGTTCCAACCATTTCCATCCCTTGAGCATCTAAAATTTTCCTACATGTCTAATTGGAAGGAATGGCATTCCTTCGGAGGCAGTAAGTTTCCGTTTCCTCGTCTTAAAACTCTGAAGTTAGATAATTGTCCTAAACTGGAGGGACATTTGCCTAGTCATCTTCCTTCCATAGAGAAAGTTCAAATTCATTGCTGTAATCAGTTGTTGGCTACACTATCTACTTTGCAATGGCTTTCCTCGGTAAAATCTTTAGATGTGGTAAAATCTATAGACATTCAATGTTCAGACTCCATCGAATGGTCGTTGTCTGAAAGTAATTCTGCATGTCTTCTGCAGCGGCTAATAATATGGAACTTCAGGATGATGTTGTCTCTACCTAAATCGTTTATGAGCCCTACTTGTCTTCAACACTTAGAACTCCATTCAATTCCATCTCTCTTGTCATTTCCGGATGATGGTCTACCCACTTCTCTACAATCACTAGAACTCCATTCACTTCCATCTCTCTTGTCATTTCCGGATGATGGTCTACCCACTTCTCTACAATCACTACGAATTTCTGACTGTGAAAATTTAGCATTCTTGCCTCCTGAAACATGGAGCAAGTACACATCACTTGTGTCTTTGGTGTTAACGCATTCATGTGATGCACTTACCTCCTTCCCACTGAATGGTTTCCCTATGCTCCAAAGGCTTGATATTGCAAACTGTGGAAATCTGCAATCCCTTTCTATTTCAGAAATTTATTCCCATACCTGTTGGCCGTCATCCCTCCAGTCACTTGATATTTTCAACTGTAATGCACTTATATCACTTCCTCAACGGATGGACACCCTCATTGCTCTTGAAAGCTTGCATCTCACATTACAATCATTGCCATGCTACGAAGGAGCTAGCCTCCCTCCCAACTTACGATCAATTTACATTGAAATTGAATCCTTGAGAACAAAAACGTTTGCAACCGGATGGGGTCTCCAAAACCTTAGTGCTCTGTCTGTTTTGGATATCAGAGGTGATGGTATTGTTAACACCTTGTTGAAGGAGCAGTTGCTGCCGGTTTCTCTCGTGTCTCTGTCAATAAATTTTCTCTCTAAAAGGAAATCCTTACCAGGAAATGGACTTCGACACCTCTCCTCCCTTGAAAAGCTTAGATTTCATAGTTGTTCAAAGCTTGGCTCATTGCCAGAAAACATGTTTCCTTCCTATCTGAAATCACTTGATTTTTCAAATTGCCCAAAACTTAAGTCCTTGCCGGACAGGTTACCTTCCTCTTTGGAAACACTGAAGCTGGGGGATTGTCAAAGACTTGGGTCATTGCCGAAAGACGGTCTCCCTTCTTCTCTTAAGCGACTGAGCATTAGTGAGTGTCGTCTGTTAAAAGCAAAGTATAAAAATCAGAAGGGGGAACATTGGTCCAGCATTGCTCACATCCCTGTCATAGAAATAGATGATGAATTGACAATATGA 3972 0.3948 MAATALVGSAFLSATVEDLLLRLSSSEFIDYITSSKLNLLKLTVFETSLLTLNSVLPDAERKQFFNPAVKQWMDDLYDAISDADDLIDEIGYDLMRCKVENAQPKHDFTFDYRLKFMNLRLQRFVQRIDSIGLQSVNGRVSCRMRSSLGSSSVLNESFIVGREDDKKKLMNMLLSDTGTNLDVVAVLGVGGVGKTTLAELVYNDKKVNEHFDLKMWIRVSEDFDIARIIRTLLASVCSLMYDENDSLDYLRFELKQKLNCRRFLFVLDDLWNVGYNDWHELVAPLVNGKLGSRVIITTRQEKVAKVVHTFPIHKLEPLSDEDCWSLLSKHAFGSKVYGGSEYPDLEAIGRKVARKCLGLPLAAKTLGGHFSSTVDLKDWISILISNIWKIPDNNILPSLLLSYQCLPSHLKRCFAYCSVFPKGYSFNRKQMILLWMAEGFLEHCQDEKAPEEVGDDYFVELLSRSFIQQLKDDSEREKFVLHDLLYDLAEIVSGKSCCKLECSGIMSKKVQHLSYIQHEYDTFKKFEIFHDFESLRSFLPICIRRGLNYLSRKVVDDLLPTLRNLRVLSLSHHRNFTMLPGSIYNLLHLRYLDLSHTDIKSLPESICHLYYLQTLKLSMCLYLTELPVDIGKLINLRHLDISNSRIKKMPMQIVRLENLQTLSVFRVGKQEVGLSVRELGKFPNIQGKLYIGNLCNVINVSEACDANLKNKELIDELELCWKQEEEQLELFWEEEEEERPHDSQTQTVVLDGLQPSINLKKLIIGSYRGTSFPSWLGDSSFSNMVYLRICYCEYCVTLPSLGKLPSLIDLSIDGMSILETIGPEFYGMSGGGFNSSFQPFPSLEHLKFSYMSNWKEWHSFGGSKFPFPRLKTLKLDNCPKLEGHLPSHLPSIEKVQIHCCNQLLATLSTLQWLSSVKSLDVVKSIDIQCSDSIEWSLSESNSACLLQRLIIWNFRMMLSLPKSFMSPTCLQHLELHSIPSLLSFPDDGLPTSLQSLELHSLPSLLSFPDDGLPTSLQSLRISDCENLAFLPPETWSKYTSLVSLVLTHSCDALTSFPLNGFPMLQRLDIANCGNLQSLSISEIYSHTCWPSSLQSLDIFNCNALISLPQRMDTLIALESLHLTLQSLPCYEGASLPPNLRSIYIEIESLRTKTFATGWGLQNLSALSVLDIRGDGIVNTLLKEQLLPVSLVSLSINFLSKRKSLPGNGLRHLSSLEKLRFHSCSKLGSLPENMFPSYLKSLDFSNCPKLKSLPDRLPSSLETLKLGDCQRLGSLPKDGLPSSLKRLSISECRLLKAKYKNQKGEHWSSIAHIPVIEIDDELTI 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06885 1323 Gene3D Ribonuclease Inhibitor 1092 1233 IPR032675 -
Vivi3g06885 1323 Gene3D Ribonuclease Inhibitor 1234 1305 IPR032675 -
Vivi3g06885 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 417 IPR027417 -
Vivi3g06885 1323 FunFam Probable disease resistance protein At1g63360 403 491 - -
Vivi3g06885 1323 Gene3D - 317 402 IPR042197 -
Vivi3g06885 1323 Gene3D - 41 128 - -
Vivi3g06885 1323 PANTHER DISEASE RESISTANCE PROTEIN RP 72 878 IPR044974 GO:0006952
Vivi3g06885 1323 SUPERFAMILY L domain-like 481 922 - -
Vivi3g06885 1323 Pfam NB-ARC domain 162 380 IPR002182 GO:0043531
Vivi3g06885 1323 PRINTS Disease resistance protein signature 257 271 - -
Vivi3g06885 1323 PRINTS Disease resistance protein signature 560 576 - -
Vivi3g06885 1323 PRINTS Disease resistance protein signature 356 370 - -
Vivi3g06885 1323 PRINTS Disease resistance protein signature 183 198 - -
Vivi3g06885 1323 SUPERFAMILY L domain-like 922 1295 - -
Vivi3g06885 1323 Pfam Rx N-terminal domain 46 104 IPR041118 -
Vivi3g06885 1323 ProSiteProfiles Leucine-rich repeat profile. 588 609 IPR001611 GO:0005515
Vivi3g06885 1323 Gene3D Ribonuclease Inhibitor 923 1089 IPR032675 -
Vivi3g06885 1323 Gene3D - 403 491 IPR036388 -
Vivi3g06885 1323 FunFam Probable disease resistance protein At1g61300 143 309 - -
Vivi3g06885 1323 SMART LRR_typ_2 1212 1236 IPR003591 -
Vivi3g06885 1323 SMART LRR_typ_2 633 656 IPR003591 -
Vivi3g06885 1323 SMART LRR_typ_2 586 609 IPR003591 -
Vivi3g06885 1323 Gene3D Ribonuclease Inhibitor 544 922 IPR032675 -
Vivi3g06885 1323 Gene3D - 142 310 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06885 Vivi-Chr3 195289859 195295362 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06885 579 662 WRKY Transcription Factor Family AT4G12020 41.176 1.18e-07 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06885 - - vvo:131593200 2540.76