Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06880 ATGGCCGCTACACCCTTGGTAGGAAGCGCTTTTCTCTCCGCGACAGTTGAAGGTTTACTACTGAGACTCGCTTCATCAGAGTTCATCGATTACATCACAAGCAGCAAGTTGAATCTCCTCAAACTCACCGTCTTCGAAACATCGCTTCTCACTCTCAATTCAGTTCTTCCCGATGCAGAGCGGAAGCAGTTCTTCAATCCCGCAGTCAAACAATGGATGGATGAATTGTACGACGCGGTCTCAGATGCAGATGATTTGATCGATGAAATCGGTTACGATTTGATAAAATGCAAGGTGAAGTACACTCAACCTAAAGACGATCTCTCATTCAATAGTAGATTGTATTTGATGAATATAATGCTAGAACTTTTTGTTCATCGGATTCGTTTCATTGGCTTACAATCTGTAAGTGGTAGGGTTTCTTGTAGAATGCGTTCGAATTCAAGTTCAGTGTTAAACGATTCTTTCATAGTTGGTAGGGAGGATGATAAAGAGAAATTGATGAATATGTTGTTGTCGGATACCGGTACAAATCTAGACGTGGTTGCTGTTTTAGGTGATGGAGGGGTTGGTAAAACTACACTTGCTGAACTAGTTTATAATGATAAAGAAGTTAATGAGCATTTTGATTTGAAAATGTGGATTCGTGTGTCGGAGAATTTTGATATCGTGAGGGTTACAAAAACTCTACTTGCATCTGAATATTCATCAACTTACAAGGACAACGATCTTGATTATCTTCGACTTGAGTTAAAGCTAAAGTTGAAATGTAGAAGATTTTTATTTGTGTTGGATGACCTATGGAATGTTGGTTATAATGATTGGCATGAGTTGGTAGCTCCTTTGGTTAATGGAAAATTGGGAAGTAGGGTGGTCGTCACAACGCGTCAAGAAAAAGTGGCAGAGGTTGTGCATACATTTCCAATTCATAAATTAGAACCTTTGTCAGACGAAGACTGTTGGTCTTTACTTTCCAAGCATGCATTTGGAAGTAAAGTTTATGGTGGCAGTGAATACCCAGATCTTGAAGCAACTGGTAGGAAAATTGCAAGAAAGTGTCTAGGATTGCCACTAGCTGCCAAAACACTTGGAGGACTTTTGTCTTCAAGTGTAGATTTAAAGGACTGGATTTCAATTTTGATTAGCAACATATGGAAGATACCAGATAATAATATTCTTCCATCTTTGCTTTTGAGTTATCAATGTCTTCCCTCTTACTTGAAAAGATGTTTTGCCTATTGCTCAATTTTTCCAAAGGGTTATTCCTTTGATAGAAAGCAATTGGTCTTGTTGTGGATGGCAGAAGGCTTCCTTGAACATTCTCAGGGTGAAAAATCACCGGAAGAAGTAGGTGATGTCTACTTTGTTGAATTGTTATCGAGATCCTTCATTCACCAGTTGAATGATGACAGTGAGAGAAAAAAGTTTGTTCTGCATGACCTTCTCTATGATTTAGCCGAGGTTGTATCTGGGAAAAGTTGTTGCAGGCTTGAAGGTGGTGGCATCATCTCAAAAAAGGTTCAACATATGTCATATATTCAAGACGAGTATGACACTTTCAAGAAGTTTGAGATTTTCTACGATTTTAAAAGCCTGCGAAGCGTCTTGCCTCTTTGCATTCGCCAGGGATCAAGTTACTTATCTAGAAAGGTGGTTGATGATTTGCTACCCACACTCAGACGTTTGCGTGTGCTATCCTTATCACATCACGAAAACTTCACTGTGTTACCAGATTCAATGAATAACTTGTTGCACTTGCGGTATCTCGATCTCTCCCATACTAATATCAAAAGCCTTCCTGAATCAATATGTGACTTGTACTATTTGCAAACCTTAAATTTATCATCATGCTTTTTACTCAATGAATTGCCGATAGATATCGGAAAGTTAATTAATTTACGCCACCTTGTTATCACTAACTCTCGCATTAAGAGGATGCCAAAGCAAATTGTTCGATTGGAAAACCTTCAAACTCTATCTGCTTTCATAGTGGGCAAGCAAGAAGTTGGGTTAAGTGTGAGAGAACTTGGGAAGTTTCCTAACATTCGGGGAAAACTTTACATTGAAAATCTGTGTAATGTCATCAATGTCAGTGAAGCATGTGATGCCAACTTGAAGAATAAAGAACTCATTGATGAGTTAGAGTTATTTTGGAAAGAAGAAGAAGAAGAAGAAGAAGAACAGTTAGAGTTATTTTGGAAAGAAGAAGAAGAACGATCACATGATTCACAAACACAAACAGTTGTGCTTGATGGGTTGCAACCATCAATAAACTTGAAGAAATTGATCATTGGCATTTATCGCGGGACAAGTTTTCCAAGTTGGTTGGGAGATTCTTCATTTTCTAACATGGTGTACTTGCGCATATGTTTTTGTGAATATTGTGTCACACTTCCATCGTTAGGGCAACTACTTTCTCTCAAAGATCTAAGTATAGATGGTATGTCGATATTGGAGACAATTGGTCCAGAGTTCTATGGCATGTCAGGTGGAGGTTTTAATTCTTCGTTCCAACCATTTCCATCCCTTGAGCATCTAAAATTTTCCTACATGTCTAATTGGAAGGAATGGCGTTCCTTCGGAGGCAGTAAGTTTCCGTTTCCTCGTCTTAAAACTCTGAAGTTAGAGGATTGTCCTAAACTGAAGGGACATTTGCCTAGTCATCTTCCTTCCATAGAGGAAATTACAATAATTCGGTGTGATGGTATGTTGGCTACACCATCTACTTTGCATTGGCTTTCCTCAGTAAAATCTTTAGAGGTGCATTCTGGAGAGGCCAGATGGCCGTTATTTGAAAGTAATTCTCTAGAGTCCACTGAATGGTCGTTGTTTGAAAGTAATTCTGCATGTCTTCTGCAGCGTGTAGTAATACGGAACTTTAGTAGGATGATGTTGTCTCTACCTAAAATGTTTATGAGTTCCACTTCTCTTCAACACTTGGAACTCTATTCGATTCCATCTCTCTTATCATTTCCGGATGATGGTCTACCCACTTCTCTGCAGTCACTAAGTATTTCTAACTGTGAGAATTTAGCATTCCTGCCTCCTGAAACGTGGAGCAAGTACACATCACTTGTGTCTTTGGATTTAGTGCAATCTTGTGATGCGCTTACCTCCTTCTCACTGAATGGTTTCCCTGTGCTCCATAGTCTTTACATTTCAGATTGTAAGAATCTGCAATGCTTTTTTGTTTCAGAAATTTATTCCCATTGCCCGTCGACCCTCCAATCACTTGATGTTTCCAACAGTGATGCATTTATGTCACGTCCTCAACGGATGGACACTCCCAACCATAATGCACTTATATCACTTCCTCTACGGATGGACACCCTCATTGCTCTTGAAAGCTTGCGGCTCACATTACCATCATTACCATGCTATGAAGGAGCTAGCCTCCCTCCCAACTTACGATCAATTTTCTTTGTATCATTAAGAACGAAAACATTTGCCACAGGATGGGGTCTCCAAAACCTTAGTGCTCTGTCTGATTTGGATATCAGAGGTGATGGTATTGTTAACACCTTGTTGAAGGAGCAGTTGCTGCCGGTTTCTCTCGTGTCTCTGTCAATACATAATTTCACTAAAAGGAAATCCTTACCAGGAAATGGACTTCAACACCTCTCCTCTCTTGAAAATCTTAAATTTAATAATTGTACAAAGCTTGGATCATTGCCAGAGAACATGTTCCCTTCCTATCTGAAATCACTGGAATTTTCGTATTGCCCAAAACTTAAGTCCTTGCCGGACAGGTTACCTTCCTCTCTAGAAATACTGGAGCTTGATGATTGTCGAAAACTTGGGTCATTGCCAGAAGACGGTCTCCCTTCTCTTAAGCGACTGATCATTAGTAATTGCCGTCTGTTAAAAGCAAAGTATGAAAATCAGAGAGGGGAACATTGGTCCAACATTGCTCACATCCCTGTCATAAAAATAGATAATAAGTTGACAATATGA 3954 0.3943 MAATPLVGSAFLSATVEGLLLRLASSEFIDYITSSKLNLLKLTVFETSLLTLNSVLPDAERKQFFNPAVKQWMDELYDAVSDADDLIDEIGYDLIKCKVKYTQPKDDLSFNSRLYLMNIMLELFVHRIRFIGLQSVSGRVSCRMRSNSSSVLNDSFIVGREDDKEKLMNMLLSDTGTNLDVVAVLGDGGVGKTTLAELVYNDKEVNEHFDLKMWIRVSENFDIVRVTKTLLASEYSSTYKDNDLDYLRLELKLKLKCRRFLFVLDDLWNVGYNDWHELVAPLVNGKLGSRVVVTTRQEKVAEVVHTFPIHKLEPLSDEDCWSLLSKHAFGSKVYGGSEYPDLEATGRKIARKCLGLPLAAKTLGGLLSSSVDLKDWISILISNIWKIPDNNILPSLLLSYQCLPSYLKRCFAYCSIFPKGYSFDRKQLVLLWMAEGFLEHSQGEKSPEEVGDVYFVELLSRSFIHQLNDDSERKKFVLHDLLYDLAEVVSGKSCCRLEGGGIISKKVQHMSYIQDEYDTFKKFEIFYDFKSLRSVLPLCIRQGSSYLSRKVVDDLLPTLRRLRVLSLSHHENFTVLPDSMNNLLHLRYLDLSHTNIKSLPESICDLYYLQTLNLSSCFLLNELPIDIGKLINLRHLVITNSRIKRMPKQIVRLENLQTLSAFIVGKQEVGLSVRELGKFPNIRGKLYIENLCNVINVSEACDANLKNKELIDELELFWKEEEEEEEEQLELFWKEEEERSHDSQTQTVVLDGLQPSINLKKLIIGIYRGTSFPSWLGDSSFSNMVYLRICFCEYCVTLPSLGQLLSLKDLSIDGMSILETIGPEFYGMSGGGFNSSFQPFPSLEHLKFSYMSNWKEWRSFGGSKFPFPRLKTLKLEDCPKLKGHLPSHLPSIEEITIIRCDGMLATPSTLHWLSSVKSLEVHSGEARWPLFESNSLESTEWSLFESNSACLLQRVVIRNFSRMMLSLPKMFMSSTSLQHLELYSIPSLLSFPDDGLPTSLQSLSISNCENLAFLPPETWSKYTSLVSLDLVQSCDALTSFSLNGFPVLHSLYISDCKNLQCFFVSEIYSHCPSTLQSLDVSNSDAFMSRPQRMDTPNHNALISLPLRMDTLIALESLRLTLPSLPCYEGASLPPNLRSIFFVSLRTKTFATGWGLQNLSALSDLDIRGDGIVNTLLKEQLLPVSLVSLSIHNFTKRKSLPGNGLQHLSSLENLKFNNCTKLGSLPENMFPSYLKSLEFSYCPKLKSLPDRLPSSLEILELDDCRKLGSLPEDGLPSLKRLIISNCRLLKAKYENQRGEHWSNIAHIPVIKIDNKLTI 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06880 1317 Gene3D - 41 118 - -
Vivi3g06880 1317 Gene3D - 140 307 IPR027417 -
Vivi3g06880 1317 Gene3D Ribonuclease Inhibitor 493 668 IPR032675 -
Vivi3g06880 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 414 IPR027417 -
Vivi3g06880 1317 PANTHER DISEASE RESISTANCE PROTEIN RP 108 899 IPR044974 GO:0006952
Vivi3g06880 1317 ProSiteProfiles Leucine-rich repeat profile. 585 606 IPR001611 GO:0005515
Vivi3g06880 1317 SMART LRR_typ_2 630 653 IPR003591 -
Vivi3g06880 1317 SMART LRR_typ_2 1207 1231 IPR003591 -
Vivi3g06880 1317 SMART LRR_typ_2 583 606 IPR003591 -
Vivi3g06880 1317 Gene3D - 314 399 IPR042197 -
Vivi3g06880 1317 Pfam NB-ARC domain 160 378 IPR002182 GO:0043531
Vivi3g06880 1317 Gene3D Ribonuclease Inhibitor 671 905 IPR032675 -
Vivi3g06880 1317 Gene3D Ribonuclease Inhibitor 1100 1298 IPR032675 -
Vivi3g06880 1317 PRINTS Disease resistance protein signature 353 367 - -
Vivi3g06880 1317 PRINTS Disease resistance protein signature 181 196 - -
Vivi3g06880 1317 PRINTS Disease resistance protein signature 254 268 - -
Vivi3g06880 1317 PRINTS Disease resistance protein signature 581 597 - -
Vivi3g06880 1317 SUPERFAMILY L domain-like 478 922 - -
Vivi3g06880 1317 Pfam Rx N-terminal domain 45 100 IPR041118 -
Vivi3g06880 1317 Coils Coil 719 739 - -
Vivi3g06880 1317 Gene3D Ribonuclease Inhibitor 930 1099 IPR032675 -
Vivi3g06880 1317 FunFam Probable disease resistance protein At1g63360 400 488 - -
Vivi3g06880 1317 Pfam Leucine rich repeat 560 617 IPR001611 GO:0005515
Vivi3g06880 1317 SUPERFAMILY L domain-like 952 1291 - -
Vivi3g06880 1317 Gene3D - 400 488 IPR036388 -
Vivi3g06880 1317 FunFam Probable disease resistance protein At1g61300 141 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06880 Vivi-Chr3 195035650 195040660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06880 576 659 WRKY Transcription Factor Family AT4G12020 38.824 4.47e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06880 - - vvo:131593200 2057.72