Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06879 ATGTCAAAAAGCTACAAAGGATGTGCGGTAGGAATAGACCTTGGAACAACATACTCTTGTGTTGCAGTGTGGGTTGAAGAACACAATAGAGTAGAAATCATACACAATGACCAAGGCAACAAGACCACTCCTTCTTTTGTTGCTTTTACTGATGAACAAAGGTTGACCGGTGATGCTGCTAAAAACCAGGCTTCCACCAACCCAGAAAATACTGTCTTTGATGCTAAGAGGTTAATTGGTAGGAAGTTTAGTGATTCTGTTGTCCAAAAAGATATAATGTTGTGGCCATTCAAGGTTAGTGCTGGTGTTAATGACAAACCGATGATTGTTGTTAAATACAAGGGTCAAGAGAAGCATCTATGTGCCGAGGAAATCTCATCTATGATTCTCACAAAGATGCGAGAGATTGCAGAGGAGTATTTGGAATCGCCGGTTAAGAATGCAGTTGTTACGGTGCCTGCTTATTTCAACGATTCTCAGCGAAAAGCCACTATAGATGCCGGATCCATTGCTGGACTTAATGTTATGCGAATAATCAATGAACCTACTGCTGCAGCTATTGCATATGGCCTCGACAAGAGAACTAATTGCGTAGGAGAACGGAACATTTTTGTGTTTGATCTTGGTGGTGGGACTTTTGATGTATCTCTCATTACAATCAAAGATAAAGTCTTTCAAGTTAAGGCTACAGCCGGAAACACTCACCTCGGAGGAGAGGACTTTGATAACAGAATGGTAAACTACTTTGTACAAGAGTTCAAAAGAAAGAAAAAAGTAGACATTATTGGGAACCCAAGAGCCTTGAGGAGGTTGAGAACTGCCTGCGAGAGGGCAAAAAGGGCCCTCACTTTTGTATTTAACACCACCATTGAGGTAGATGCTTTATTTCAGGCCATTGATTTCTCTTCGTCAATCACCCGTGCCAAGTTTGAGGAAATCAACATGGATCTTTTCAACGAGTGCTTGGAGACCGTTGAGAGGTGTCTGGTTGATGCGAAGATGGACAAAAATAGTATAGATGATGTTGTCCTTGTTGGTGGATCTTCAAGGATTCCTAAAGTGAGGCAACTATTGCAAGACTTTTTTAAGGAGAAAGAACTATGCAAGAGCATCAATCCTGACGAGGCTGTTGCTTATGGAGCTGCTGTTCAGGCTGCTTTATTGAGCGAAGGCGTTAATAATGTCCCAAATTTGGAGCTGATGGATGTCACACCTCTGTCTTTAGGTTGGAGCCTAAAAAATGATGTCATGGGTGTGGTGATTCCTAGGAACACTTCTGTTCCGGTCAAGAAAACAAAATCATATGTTACAGTTAGCGATAACCAATCGACTGTCTCTATTGAGGTTTATGAGGGAGAGAGAACTAGAGCCGGTGACAACAACCTTCTTGGTTTTTTCTGTCTTTTTGGCTTACCCCCGGCTCCTCGGGGCTATCCTTTTAAGGTATGCTTTGATATAGATAAAAATGGTATTCTAACTGTTTCTGCTACGGAAAAATCTACTGGAAATACAAATGAGATTACAATAACCAACAACAAAGAAAGATTATCTAACGATGAAATTAAGAGAATGATTCGCGAAGCTGAGGATTATCGCGTTGAAGATAAGAAATTCTTAAGGCAGGCCAAAGTTATGAATGCATTGGATGACCTTGTTTACAAAATGAGAAATGCAATGGAGAAGGTTATTAACTTGAAGCTCACGTCACAAGAAAACAGGAAAATCAATGATGCAATTACCATGGCCACAAATTTGCTTGATGAGAAAGACAAACAGCGCGAAATTGATGTTCTTGAGGATCAATTGAGCGTTCTTGAGAATATGTATGAACACATTATGAAGTTGTAA 1848 0.4042 MSKSYKGCAVGIDLGTTYSCVAVWVEEHNRVEIIHNDQGNKTTPSFVAFTDEQRLTGDAAKNQASTNPENTVFDAKRLIGRKFSDSVVQKDIMLWPFKVSAGVNDKPMIVVKYKGQEKHLCAEEISSMILTKMREIAEEYLESPVKNAVVTVPAYFNDSQRKATIDAGSIAGLNVMRIINEPTAAAIAYGLDKRTNCVGERNIFVFDLGGGTFDVSLITIKDKVFQVKATAGNTHLGGEDFDNRMVNYFVQEFKRKKKVDIIGNPRALRRLRTACERAKRALTFVFNTTIEVDALFQAIDFSSSITRAKFEEINMDLFNECLETVERCLVDAKMDKNSIDDVVLVGGSSRIPKVRQLLQDFFKEKELCKSINPDEAVAYGAAVQAALLSEGVNNVPNLELMDVTPLSLGWSLKNDVMGVVIPRNTSVPVKKTKSYVTVSDNQSTVSIEVYEGERTRAGDNNLLGFFCLFGLPPAPRGYPFKVCFDIDKNGILTVSATEKSTGNTNEITITNNKERLSNDEIKRMIREAEDYRVEDKKFLRQAKVMNALDDLVYKMRNAMEKVINLKLTSQENRKINDAITMATNLLDEKDKQREIDVLEDQLSVLENMYEHIMKL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06879 615 Gene3D - 73 128 - -
Vivi3g06879 615 FunFam Heat shock protein 70 10 201 - -
Vivi3g06879 615 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 544 IPR029047 -
Vivi3g06879 615 Gene3D - 10 386 - -
Vivi3g06879 615 PANTHER HEAT SHOCK PROTEIN 70KDA 9 578 IPR013126 GO:0005524|GO:0140662
Vivi3g06879 615 Coils Coil 588 615 - -
Vivi3g06879 615 Gene3D - 545 615 IPR029048 -
Vivi3g06879 615 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vivi3g06879 615 FunFam Heat shock 70 kDa protein 392 545 - -
Vivi3g06879 615 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vivi3g06879 615 Gene3D Actin; Chain A, domain 4 237 320 - -
Vivi3g06879 615 FunFam Heat shock 70 kDa protein 73 128 - -
Vivi3g06879 615 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vivi3g06879 615 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vivi3g06879 615 Pfam Hsp70 protein 9 613 IPR013126 GO:0005524|GO:0140662
Vivi3g06879 615 Gene3D - 194 368 - -
Vivi3g06879 615 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 548 IPR029047 -
Vivi3g06879 615 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Vivi3g06879 615 FunFam Heat shock 70 kDa 237 320 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 8 21 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 60 68 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 397 416 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 148 168 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 371 391 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 211 221 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 339 355 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 477 493 - -
Vivi3g06879 615 PRINTS 70kDa heat shock protein signature 38 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06879 Vivi-Chr3 195025562 195027915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06879 1 613 Calmodulin-binding Proteins AT3G12580 65.747 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06879 K03283 - vvo:131625172 933.71