Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06878 ATGGCCGAAACAACAGCATTGGTGGAACTGGGAGGCGCTTTTCTCCCTGCAACTGTTGAATCCCTATTACACAAACTCGCTTCATCAGACTTCATCCATTACCTCAAATACAGCCACATGAACATCTTAAAACTCACCGTCTTCGAGACTAAGCTTCTCACTCTTCACTCCGTTCTTCTCGATGCAGACCACAAACAGTTCTTCAATCCCAAAATCAAGAAATGGATGAATAAATTGTACGATACAGTCTCCGACGCCGAAGATCTGATCGACGAAATCGGTTACGATTCGCTTCGATGCAAGGTGCAGAATACACAACCTAGATTAGGTTTTATGTTCGATTTCAAATTGAAGATGATTTGTGATAGGCTTCAGCGTTTTGTTCAACAGATAGACACTCTTGGTTTGCAATCTGTAAGTGTTAGGGTTTCTCTTGATAAAACTCTCTCAAGTTCTATGGTGAATGTGAATGATTCTGTTATAGTTGGTAGAAAGGATGATAAAGAGAGATTGATTAACATGCTGTTGTTAAACGATGTTTCGAGTAGTAGTAATTTAGGTGTGATTGCTATTTTAGGCGTTGGAGGTGTTGGTAAATCGACACTTGCCCGACTTGTTTACGATGATAGACAAGTTGATCAACATTTTGATGTGAAAGTGTTTGTTCGGGTGTTAGAAGGTTTTGATATTCTAGAAGTAACCAAAGCGCTTTATAATTCCATGTCTAAATCAACTAAATCAACTTACGTTGGCAAAGATCTAAATCATCTTCGACTTCGTTTCAAGGATGAGTTATTGTGTAAAAGATTTTTGTTTGTGTTGGATGACTTAAGGATTGATAGTTATAATGATTGGCACCATTTGATAACTCCGTTGTTTAATGGAAATTGTGGAAGTAGGGTGATAGTCACAACACGTTATGAAAAAGTTGCTGAGGTTGTACGTACGTATCCGGTTCTTAAGTTAGGACCTCTTTCAGAAGAAGATTGTTGGTCTTTACTCTCTAAGCATGCTTTTGGAAGTTGTGGTAATAAATTTCCAGAACTAGAAGCAATTGGCAGGAAGATTGCAAGAAAATGTGGCGGATTTCCAATAGCTGCCAAATCGCTCGGAGGGCTTTTGAGTTCAAAGGTAGATGCGAATGTGTGGACAGCAATCTTGAATAGTGATATATGGAACATAACAAATGATTGTGTTATGCTTTCTTTGCTTTTGACTTATCAACATCTTCCTTCTCAATTGAAAAGATGTTTTTCCTATTGCTCAATTTTTCCGAAGGGTTATCTCTTTAATAGAAAGAAATTGGTTTTGTTGTGGATGGCAGAAGGCTTCCTCGAAGATTCCGTAGTTGAAAAAGCGCCAGAGGATGTTGGCGATGATTACTTTGATGAAATGTTGTCGAGATCCTTATTTGAACCATCAAATGATGATATTGATGATTCTTCTGGAGAAAAGTTTATTATGCATGACCTTATCTATGATCTAGCAACAATTGCATCTGGGAAAAGTTGTTGCAGGTTTGAATCTGGTGGTACAATCTCTGATGATGTTCACCATTTATCTTACTATCAAGAGGAGTATGACATTTTCAAAAAGTTTGAGATGTTCTTCGATTTCAAATGCTTGCGAAGTTTCCTACCCATTGGTAGTTCTAAGTGGCAAGAATCTTACTTATCACACTATGTGATTGATTATATGATACCTTCTATTAGAAGGCTGCGAGTGTTATCCTTATCAAATTACAAAAGCATCACCGTGCTACCAAATTCAATTAATAATTTGGTGCAACTGCGGTATCTGGATCTCTCCTACACTAAAATCAAATGCTTGCCCGATACAACATGTGACCTTTACTATTTGCAGACTTTAACTTTATTAGGATGCATGAATCTCATTGAATTGCCGGTACACATCGGAAACTTAATTAATTTGCGTCACCTTGATATCAGCTATACGAGAGTAAAAGAGATGCCAGAGCAAGTTGTTGGACTAGAAAACCTTCAGACTCTAACGGTTTTTCTAGTGGCCAAGCAAGAAATTGGGTTAAGTGTTCGAGAGCTTGGTAAGTTTCCAAACCTACGAGGAAAACTCTGCATTGTGAACATGCATAATGGCATTGATGTTAGTGAGGTGTGTGATGCCAACTTGAAGAACAAAGAATACCTTGAGGAGTTAAAGGTATATTGGGATGGGCAAACTGAAGATTCACCAACACCAACAGAGAAAGCTATTCTCAATGAGTTACAACCATCAATAAACTTGAAGAAATTGAGCATTGGCTTCTACGGTGGGACAAGCTTTCCAAGTTGGTTGGGAGATTGTTCATTTTCTAACATGGTGTACCTTTGCATCAATACTTGTAAGCATTGCATAACACTTCCTCCACTAGGGCAGTTACCTTCTCTCAAAGAGCTGGAGATAAATGATATGAGTAGAGTGGAAACAATTGGCCTAGAGTTCTATGGCATGACAGGGGTGAGTACTAGTTCTCCATTCCAACCATTTCCATTGCTTGAGAAACTACAATTTGATAGCATGCCCAATTGGAAGGAATGGCTTTCCTTCGGAGGCAGAAACTTTCCTTTTCCTCGTCTTAAAACTCTAAGGCTAAGTGGATGTGCTAAACTGAGGGGACATTTGCCTAGTCATCTTCCTTCTATTGAGGAAGTTACAGTTCATTGGTGCAATCTTTTGTGGACTACCCTATCTACTTTGCATTGGCTTTCCTCAGTAAAATCTCTAGATTTGAGGTCTCGAGGTTCCACTGAATTGTCGTTACTTGGAAATGATTCTCCATGTCTTTTGCAGGCTGTGACAATATTCGGCTTTATCAAGCTATTATCTCTGCCTAAAATGTTTTCGAGCTCTACTTGTCTTCAACACTTGCATCTCATCTATATTTCCTCTCTCACTGCATTTCCAGCAAATGGTCTTCCTACTTCATTGCAGTCACTTCATATAGATGAGTGTCAGAATTTAGCATTCTTACCTCCTGAAACATGGAGCAATTACACATCACTTGTGACTTTATATTTAAAAAATTGTTGTGATTCACTAACCTCCTTTCAACTCAATGGCTTTCCTGTGCTCCAAACTCTTTCTATTGAAGGTTGCAGCAGTCTTGAGTCCATTTTTATTTCAGAAAATGCTTCCCTTGGCCTGTCAACTCTCCAATCACTTCAGGTGAAGAACTGTGATGCACTTAGATCACTGCCTCAACGAATGGACACCCTCATTGCTCTTGGAAGCCTGACTCTCAACAATTTATCGCTGTGTTGTGAAGTAGCTTGTCTCCCTCCCAAATTGCAATTTATGCATATTGAATCCTTGAGAACAACTACACCTGTGAGTGAATGGGGTTTCCAAAACCTTTATACTCTTTATGATTTGCATATTGGAGGTGATAATATTGTTAACACCTTGCTAAAAGAGCATTTACTGCCCAATTTCCTTGTGTCCTTGACAATAACTAATCTCTCTGAAATGAAGTGCTTAGAAGGAAATGGGCTCCAACACATTTCCTCTTTGAAAAATCTTACATTTAAATGCTGTGCAAAGCTCGAGTCTTATCGAGGCTTATTTCCTTCTTTTCTGAAATCACTTGTATTTGCAAATTGTCCAAAACTCAAGTCTTTGCCAGACAGGCTTCCTTCCTCTTTGGAAACTCTGGAATTTGACGAGTGTCTAAGACTCGGGTTATTGCCAAGACACGGGTTTCCTGACTCTCTTAAGGTACTGGGCATTAGTCGATGCCCTCTTTTAAAAGCAAGGTACGCCACTAAGAGAAAGGATCATTTGTCCAAGATTGCTCACATTCCTGTCACAAAAATAGATCATGAAGTGACAATATGA 3852 0.3891 MAETTALVELGGAFLPATVESLLHKLASSDFIHYLKYSHMNILKLTVFETKLLTLHSVLLDADHKQFFNPKIKKWMNKLYDTVSDAEDLIDEIGYDSLRCKVQNTQPRLGFMFDFKLKMICDRLQRFVQQIDTLGLQSVSVRVSLDKTLSSSMVNVNDSVIVGRKDDKERLINMLLLNDVSSSSNLGVIAILGVGGVGKSTLARLVYDDRQVDQHFDVKVFVRVLEGFDILEVTKALYNSMSKSTKSTYVGKDLNHLRLRFKDELLCKRFLFVLDDLRIDSYNDWHHLITPLFNGNCGSRVIVTTRYEKVAEVVRTYPVLKLGPLSEEDCWSLLSKHAFGSCGNKFPELEAIGRKIARKCGGFPIAAKSLGGLLSSKVDANVWTAILNSDIWNITNDCVMLSLLLTYQHLPSQLKRCFSYCSIFPKGYLFNRKKLVLLWMAEGFLEDSVVEKAPEDVGDDYFDEMLSRSLFEPSNDDIDDSSGEKFIMHDLIYDLATIASGKSCCRFESGGTISDDVHHLSYYQEEYDIFKKFEMFFDFKCLRSFLPIGSSKWQESYLSHYVIDYMIPSIRRLRVLSLSNYKSITVLPNSINNLVQLRYLDLSYTKIKCLPDTTCDLYYLQTLTLLGCMNLIELPVHIGNLINLRHLDISYTRVKEMPEQVVGLENLQTLTVFLVAKQEIGLSVRELGKFPNLRGKLCIVNMHNGIDVSEVCDANLKNKEYLEELKVYWDGQTEDSPTPTEKAILNELQPSINLKKLSIGFYGGTSFPSWLGDCSFSNMVYLCINTCKHCITLPPLGQLPSLKELEINDMSRVETIGLEFYGMTGVSTSSPFQPFPLLEKLQFDSMPNWKEWLSFGGRNFPFPRLKTLRLSGCAKLRGHLPSHLPSIEEVTVHWCNLLWTTLSTLHWLSSVKSLDLRSRGSTELSLLGNDSPCLLQAVTIFGFIKLLSLPKMFSSSTCLQHLHLIYISSLTAFPANGLPTSLQSLHIDECQNLAFLPPETWSNYTSLVTLYLKNCCDSLTSFQLNGFPVLQTLSIEGCSSLESIFISENASLGLSTLQSLQVKNCDALRSLPQRMDTLIALGSLTLNNLSLCCEVACLPPKLQFMHIESLRTTTPVSEWGFQNLYTLYDLHIGGDNIVNTLLKEHLLPNFLVSLTITNLSEMKCLEGNGLQHISSLKNLTFKCCAKLESYRGLFPSFLKSLVFANCPKLKSLPDRLPSSLETLEFDECLRLGLLPRHGFPDSLKVLGISRCPLLKARYATKRKDHLSKIAHIPVTKIDHEVTI 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06878 1283 Pfam NB-ARC domain 165 388 IPR002182 GO:0043531
Vivi3g06878 1283 Gene3D - 407 498 IPR036388 -
Vivi3g06878 1283 Gene3D - 324 406 IPR042197 -
Vivi3g06878 1283 Gene3D - 19 132 - -
Vivi3g06878 1283 Pfam Rx N-terminal domain 49 104 IPR041118 -
Vivi3g06878 1283 SUPERFAMILY L domain-like 488 877 - -
Vivi3g06878 1283 Gene3D - 141 318 IPR027417 -
Vivi3g06878 1283 FunFam Probable disease resistance protein At1g63360 407 498 - -
Vivi3g06878 1283 Gene3D Ribonuclease Inhibitor 550 934 IPR032675 -
Vivi3g06878 1283 Gene3D Ribonuclease Inhibitor 943 1263 IPR032675 -
Vivi3g06878 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 421 IPR027417 -
Vivi3g06878 1283 SMART LRR_typ_2 594 617 IPR003591 -
Vivi3g06878 1283 SMART LRR_typ_2 641 664 IPR003591 -
Vivi3g06878 1283 SUPERFAMILY L domain-like 904 1256 - -
Vivi3g06878 1283 PANTHER DISEASE RESISTANCE PROTEIN RP 79 870 IPR044974 GO:0006952
Vivi3g06878 1283 PRINTS Disease resistance protein signature 188 203 - -
Vivi3g06878 1283 PRINTS Disease resistance protein signature 360 374 - -
Vivi3g06878 1283 PRINTS Disease resistance protein signature 860 876 - -
Vivi3g06878 1283 PRINTS Disease resistance protein signature 264 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06878 Vivi-Chr3 194928095 194932950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06878 584 670 WRKY Transcription Factor Family AT4G12020 39.773 9.33e-08 55.1