Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06874 ATGGCATCCGAATCCTCTAGCCTCTCAGTCACTTCAAATAATCATGTTGATTCTTCCAAACCAAAAAACGTGGTGCACAAGGAGGAGAATGAACAAGGTCAGTCTTCAAAATCCAATTCCAACATGCCGATTGATTTTGTGAAGTTATCGAAAGAGGATTCAGTTGATGGGTCAAAGGTGCAAGAGCACAATTTTTTTAACCCTATTCAAGTCGGTGGCTCGTCGTCTGATCCTCCTAATACCGACAATGAAAAGAAAGGAGAGAAAACCATTGACGAGAAGAATTTGGAGTCAAAGACATCTTATGCATGCAACTTTTGTAAGAGAGAATTTTCTACTTTACAAGCGTTAGGAGGGCACCAGAACGCCCATAAGGCAGAACGTGCATTAAAAAAACAGCGTGAAGAAAGATATGAACATGATGTTTTAGGGTTAGGGAAAACTCACTTGAACCCTTATTTTCGTTATCCTAGTGCTCTTTTTTCACCTTATGGGTCACTTGGGGTTCGAATGGACTCCATGATTCAAAAACCATCTCTTTTTAACCCTAGGGTTACACCAAATAATTTTACTTATGGACATGGTGGTTTGTGTTTACAAGAGACATTAAACCCTTCCCTTGTTAATTTGAGAAATAATATGGAAGGTAGTAGCAGGGTTGGAATTCTTGGTCTTGGTGGTGCAACTTCTTCAAGGGTTGAAAATAGTGCAAATAATAAAATTAGTTCAAACTCAATCATAGAAAATAATTTTTTTGTGGCTCCTGCTCCTGTTAAAGATGATATTCATCAACCAAAGTTCAACACCGAAGAAGAACTTTCCGATTCTGAATCTTCAGGGCTTGATTTGACACTTAAGCTTTGA 864 0.3843 MASESSSLSVTSNNHVDSSKPKNVVHKEENEQGQSSKSNSNMPIDFVKLSKEDSVDGSKVQEHNFFNPIQVGGSSSDPPNTDNEKKGEKTIDEKNLESKTSYACNFCKREFSTLQALGGHQNAHKAERALKKQREERYEHDVLGLGKTHLNPYFRYPSALFSPYGSLGVRMDSMIQKPSLFNPRVTPNNFTYGHGGLCLQETLNPSLVNLRNNMEGSSRVGILGLGGATSSRVENSANNKISSNSIIENNFFVAPAPVKDDIHQPKFNTEEELSDSESSGLDLTLKL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06874 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vivi3g06874 287 Gene3D Classic Zinc Finger 80 144 - -
Vivi3g06874 287 SUPERFAMILY beta-beta-alpha zinc fingers 99 130 IPR036236 -
Vivi3g06874 287 Pfam C2H2-type zinc finger 102 126 - -
Vivi3g06874 287 MobiDBLite consensus disorder prediction 268 287 - -
Vivi3g06874 287 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 287 IPR044246 GO:0009788
Vivi3g06874 287 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vivi3g06874 287 MobiDBLite consensus disorder prediction 1 94 - -
Vivi3g06874 287 MobiDBLite consensus disorder prediction 60 80 - -
Vivi3g06874 287 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06874 Vivi-Chr3 194786378 194787431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06874 85 287 C2H2 Transcription Factor Family AT5G27880 28.700 2.23e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06874 - - tpra:123915384 283.878