Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06873 ATGGCATCCGAATCCTCTAGCCTCTCAGTCACTTCAAATAATCATGTTGATTCTTCCAAACCAAAAAACGTGGTGGACAAGAAGGAGAATGATTTTGTGAAGATATCGAAAGAGGATTCGGTTGACGGGTCAAAGGTGCAAGAGCATAATTTTTTTAGCCCTATTCAAGTTGGTGGTTCGTCGTATCATTCTCCTCATACCGACAATGAAAAGAAAGACGAGAAAACCATTGAAGAAAAAAATTTGGAGTCAAAGACATCTTACTCATGTAACTTTTGCAAAAGAGAGTTTTCTACTTTACAAGCGTTGGGAGGGCATCAGAATGCCCATAAGGCAGAACGTGCTTTACAAAAGCAACGTGAACAAAGGTACGAAAATGATGCTTTAGGGTTAGGACAAACACACTTGAACCCTTATTTTCGTTATCCTAATGCTCTTTATTCACCTTATGGATCACTTGGTGTTCGAATGGACTCAATGATTCAAAAACCATCTTTATTTAATCCAAGGGTTACAACAAATAATTTTGCATATGGTCATGGTGGTTTGTGTTTGCAAGAGACATTAAACCCTTCTCTTGTTAGTTTGAGAAATAATATGGAAGGTAGTAGCAGGATTGAACTTCTAGGTCTTGGTGGTGCAACTTCTTCTAGGATTGAAAATGGTGCAACTAATAAAATTGCTGCTTTTCTAAAATTTGGAGAGTCTTCTAAAGATGTTGCCACAAGTTCAAACTCAATCATAGAGAAGAATTTTTTTGTGGCTCCTGCTCCTATCAAAGATGAAATTCATCAACCAAAGTTCAACATTGAAGAAGAACCTTCCGATTCCGAATCTTCTGGGCTTGATTTGACACTTAAACTTTGA 867 0.3749 MASESSSLSVTSNNHVDSSKPKNVVDKKENDFVKISKEDSVDGSKVQEHNFFSPIQVGGSSYHSPHTDNEKKDEKTIEEKNLESKTSYSCNFCKREFSTLQALGGHQNAHKAERALQKQREQRYENDALGLGQTHLNPYFRYPNALYSPYGSLGVRMDSMIQKPSLFNPRVTTNNFAYGHGGLCLQETLNPSLVSLRNNMEGSSRIELLGLGGATSSRIENGATNKIAAFLKFGESSKDVATSSNSIIEKNFFVAPAPIKDEIHQPKFNIEEEPSDSESSGLDLTLKL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06873 288 MobiDBLite consensus disorder prediction 65 80 - -
Vivi3g06873 288 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vivi3g06873 288 MobiDBLite consensus disorder prediction 1 31 - -
Vivi3g06873 288 Gene3D Classic Zinc Finger 63 132 - -
Vivi3g06873 288 MobiDBLite consensus disorder prediction 267 288 - -
Vivi3g06873 288 MobiDBLite consensus disorder prediction 54 80 - -
Vivi3g06873 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Vivi3g06873 288 SUPERFAMILY beta-beta-alpha zinc fingers 85 116 IPR036236 -
Vivi3g06873 288 Pfam C2H2-type zinc finger 88 112 - -
Vivi3g06873 288 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 288 IPR044246 GO:0009788
Vivi3g06873 288 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06873 Vivi-Chr3 194749137 194750180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06873 88 180 C2H2 Transcription Factor Family AT5G27880 40.541 8.37e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g06873 zf-C2H2_6 1.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06873 - - tpra:123915384 303.138