Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06870 ATGGCATCCGAATCCTCTAGCATCTCAGTCACTTCACAAAATCATGGTAATTCTTCCAAAACAAAAAACCTGGTGGACATGATGGAGAATGAGCAAGGTCAGTCTTCAAAATCCGATTCCAACATGCCTATTGATTTTGTGAAGCTATCGAAAGAGGATTCCGTTGACGCGTCAAAGGTGCAAGAACACAATTTTTTTAGCCCTATTCAAGTTGGTGGTTCGTCGTCTCATTCTCCTAATGCTGACAATGAAAAGAAAAAAGAGAAAACCACCGGAGAGAAGAATTCGGCGTCAAAGACGTCTTATCCATGCAACTTTTGCAATAGAGAATATCCTACGTTACAGGCATTAGGAGGGCACCAGAACGCCCATAAAACGGAACGTGCTTTACAAATGCAGCGCGAACAAAGGTATGGTGCTTTAGGGTTAGGGCAAACTCACTTGAACCCTTATTTTCATTATCCTAGTGCTCTTTCTTCACCTTATGGATCACTTGGGGTTAGAATGAGTTCAATGATTCAAAAACCATCTTTTTATTTTAGCCCTATGGTTACACCAAATAAATTCGCATATGGACGTGGTTGTGTGTGTTTCCAAGAGACATTAAACCCATCCCTTGTTAATTTGAGAAACAATATGGAAGGTAGTAGCAGGGTTGGAATTATAGGTCTTGGTGGTGCAACTTCTTCTAGGGTTGAAAATGATGCAAATAATAAAATTGCTTCTTTTCTAAAACTTGGAGAGTCTTCTAAAGATGTTGCCACAAGCTCAAACTCAATCATAGAGAAGAATTTTTTTGTGGATGCTGCTCCTGTCAAAGATGAAATTTATCAACCAGAGTTCCAAGATGAAATTGAAACTGAAGATGAACCTTCCGATTCTGAATCTTCTGGGCTTGATTTGTCACTTAAGCTTTGA 918 0.3943 MASESSSISVTSQNHGNSSKTKNLVDMMENEQGQSSKSDSNMPIDFVKLSKEDSVDASKVQEHNFFSPIQVGGSSSHSPNADNEKKKEKTTGEKNSASKTSYPCNFCNREYPTLQALGGHQNAHKTERALQMQREQRYGALGLGQTHLNPYFHYPSALSSPYGSLGVRMSSMIQKPSFYFSPMVTPNKFAYGRGCVCFQETLNPSLVNLRNNMEGSSRVGIIGLGGATSSRVENDANNKIASFLKLGESSKDVATSSNSIIEKNFFVDAAPVKDEIYQPEFQDEIETEDEPSDSESSGLDLSLKL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06870 305 MobiDBLite consensus disorder prediction 1 100 - -
Vivi3g06870 305 Pfam C2H2-type zinc finger 102 125 - -
Vivi3g06870 305 MobiDBLite consensus disorder prediction 277 305 - -
Vivi3g06870 305 MobiDBLite consensus disorder prediction 1 43 - -
Vivi3g06870 305 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vivi3g06870 305 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 305 IPR044246 GO:0009788
Vivi3g06870 305 MobiDBLite consensus disorder prediction 60 79 - -
Vivi3g06870 305 MobiDBLite consensus disorder prediction 281 295 - -
Vivi3g06870 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vivi3g06870 305 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06870 Vivi-Chr3 194525756 194526673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06870 94 216 C2H2 Transcription Factor Family AT5G01860 34.074 1.66e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06870 - - tpra:123915384 267.7