Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06869 ATGGCATCCCAATCCTCCAGCATCTCAGTCACTTCACAAAATCATGGCGATTCATCCAAAATAAAAAATGTGATGGATAAAGAGATTGAACAAGGTCAATCTTCAAAATCTGATTCCAACATGCCTATTGATTTTGTGAAGCTACCGAAAGAGGATTCGGTTGACGCGTCAACGGTGCAAGAACACAATTTTTTTAGCCCTATTCAAGTTCGTCGTTCGTGGTCCGATTCTCCTAATGCTGACAATGAAAAGAAAAAAGAGAAAACCATTGGAGAGAAGAACTCAGAGTCAAAGACGTCTTATCCATGCAACTTTTGCATGAGAGAATATCCTACTTTACAAGCGTTAGGAGGGCACCAGAATGCCCATAAAGCGGAACGTGCTTTACAAAAGCTGCGCGAACAAAGGTATGGTGCTTTAGGGTTAGGACAAACTTACTTGAACCCTTGTTTTCGTTATCCTAGTGCTCTTTATTCACCCTATGGATCACTCGGGGTTAGAATGAATTCAATGATTCAAAAACCATCTTTCTTTAGCCCTAGGGTTACACCACATAATTTTGCATATGGTCATGGTGGTATGTATTTGCAAGAGAGATTAAACCCTTCCCTTGTTAATTTGAGAAACAGTATGGAAGGTAGTAGCAGGGTTGGAATTCCAGGTCTTGGAGGTGCAACTTCTTCTAGAGTTGAAAATGATGCAAATAACAAAATTGCTGCTTTTCTAAAACTTGGAGAGTCTTCTAAAGATGTTGCCACAAGTTCAAACTTAATTATAGAAAAGAATTTTTTTGTCAAAGATGATATTCTTCAACCAAAGTTCAACACTGAAGATGATCCCTCAGATACTGAATCTTCGGGGTTTGATTTGACACTTAAGCTTTGA 885 0.3887 MASQSSSISVTSQNHGDSSKIKNVMDKEIEQGQSSKSDSNMPIDFVKLPKEDSVDASTVQEHNFFSPIQVRRSWSDSPNADNEKKKEKTIGEKNSESKTSYPCNFCMREYPTLQALGGHQNAHKAERALQKLREQRYGALGLGQTYLNPCFRYPSALYSPYGSLGVRMNSMIQKPSFFSPRVTPHNFAYGHGGMYLQERLNPSLVNLRNSMEGSSRVGIPGLGGATSSRVENDANNKIAAFLKLGESSKDVATSSNLIIEKNFFVKDDILQPKFNTEDDPSDTESSGFDLTLKL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06869 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Vivi3g06869 294 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 294 IPR044246 GO:0009788
Vivi3g06869 294 MobiDBLite consensus disorder prediction 274 294 - -
Vivi3g06869 294 Pfam C2H2-type zinc finger 101 125 - -
Vivi3g06869 294 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Vivi3g06869 294 MobiDBLite consensus disorder prediction 1 48 - -
Vivi3g06869 294 MobiDBLite consensus disorder prediction 70 96 - -
Vivi3g06869 294 MobiDBLite consensus disorder prediction 77 94 - -
Vivi3g06869 294 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06869 Vivi-Chr3 194422810 194423694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06869 95 191 C2H2 Transcription Factor Family AT5G27880 35.965 2.12e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06869 - - tpra:123915384 276.944