Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06868 ATGGCATCTGAATCCTCTAGCATCTCAGTCACTTCACAAAATCATGGTGATTCATCCAAAACAAAAAATGTGGTGGATAAGGAGATTGAACAAGGTCAATCTTCAAAATCTGATTCCAACATGCCTATTGATTTTATGAAGCTATCGAAAGAGGATTCGGTTGACGCGTCAACGGTGCAAGAACACAATTTTTTTAGCCCTATTCAAGTTCGTCGTTCGTGGTCTGATTCTCCTAAGGCTGATGATGAAAAGAAAAAAGAGAAAACCACTGGAGAGAAGAACTCAGAGTCAAAGACGTCTTATCCATGCAACTTTTGCATGAGAGAATATCCTACTTTACAAGCGTTAGGAGGGCACCAGAACGCCCATAAAGCGGAACGTGCTTTACAAAAGCGGCGCGAACAAAGGTATGGTGCTTTAGGGTTAGGACAAACTTACTTGAACCCTTGTTTTCGTTATCCTAGTGCTCTTTATTCACCCTATGGATCACTCGGGGTTAGAATGAATTCAATGATTCAAAAACCATCTTTTTTTAGCCCTAGGGTTGCACCACATAATTTTGCATATGGTCATGGTGGTATGTATTTGCAAGAGAGATTAAACCCTTCCCTTGTTAATTTGAGAAACAGTATGGAAGGTAGTAGCAGGGTTGGAATTCCAGGTCTTGGTGGTGCAACTTCTTCTAGAGTTGAAAATGATGCAAATAACAAAATTGCTGCTTTTCTAAAACTTGGAGAGTCTTCTAAAGATGTTGCCACAAGTTCAAACTCATTCATAGAGAAGAATTTTTTTGTGGCTCCTGCTCCTATCAAAGATGAAATTCATCAACCAAAGATCAACACTGAAGAAGAACCTTCCGATTCTGAATCTTCTGGGCTTGATTTGACCCTTAAGCTTTGA 900 0.3978 MASESSSISVTSQNHGDSSKTKNVVDKEIEQGQSSKSDSNMPIDFMKLSKEDSVDASTVQEHNFFSPIQVRRSWSDSPKADDEKKKEKTTGEKNSESKTSYPCNFCMREYPTLQALGGHQNAHKAERALQKRREQRYGALGLGQTYLNPCFRYPSALYSPYGSLGVRMNSMIQKPSFFSPRVAPHNFAYGHGGMYLQERLNPSLVNLRNSMEGSSRVGIPGLGGATSSRVENDANNKIAAFLKLGESSKDVATSSNSFIEKNFFVAPAPIKDEIHQPKINTEEEPSDSESSGLDLTLKL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06868 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Vivi3g06868 299 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 299 IPR044246 GO:0009788
Vivi3g06868 299 MobiDBLite consensus disorder prediction 274 299 - -
Vivi3g06868 299 MobiDBLite consensus disorder prediction 75 94 - -
Vivi3g06868 299 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Vivi3g06868 299 MobiDBLite consensus disorder prediction 58 73 - -
Vivi3g06868 299 Pfam C2H2-type zinc finger 101 125 - -
Vivi3g06868 299 MobiDBLite consensus disorder prediction 1 99 - -
Vivi3g06868 299 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06868 Vivi-Chr3 194395500 194396399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06868 95 191 C2H2 Transcription Factor Family AT5G27880 35.088 1.71e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06868 - - tpra:123915384 291.967