Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06867 ATGGCATCCGAATCCTCTAGCCCCTCAGTCACTTCACAAAATCATGGTGATTCTTCCGAAACAAAAAACATGGTGGACAAGAAGGAGATTGAACAAGGTCAATCTTCAAAATCTAATTCCAACATGCCTATTAATTTTGTGAAGCTATCGAAAGAGGCTTCGGTTGACGGGTCAAAGGTGCAAGCACACAATTTGTTTAGCCATATTCAAGTTGGCGGTTCCTCGTCTCATTCTCCTAATACAGACAATGAAAAGAAAGGAGAGAAAACCATTGAAGGGAAGAATTCGGCGTCAAAGGTATCTTATGCTTGTAAGTTTTGCAAGAGAGAATTTCCTACCTTACAAGCGTTGGGAGGGCACCAGAACGCCCATAAGGCAGAACGTGCTTTAGAAAATCAACGTGAACAAAGGTACATAAATAATGCTTTAGGGTTAGGGCAAATTCACTTGAACCCTACTTACTTTTGTTATCCTAGTTCAAATTCACCTTATGGATCACTCGGGGTTAGAATGGATTCAATGATTCAAAAACCATCCTTTTTTAGCCCTAGGGTTACACCAAATAATTTGGCATATAGTCATGGTGGTGTTGGTGGTGTGTGTTTGAGAAATAGTATGGAAGGAAGTAGTAGGGTTGGAATTCTTGGTGGTGCAACTTCTACTAGGATTGAAAATGGTGCAAATAATAAAATTGCCGCTTTTCTAAAACTTGGAGAGTCTTCAAAAGATGTTGCCACAAATTCAAACTCAATCATAGAAAGGAATTTTTTTGTGGCTCCTGCTCCTGTCAAAGATGATATACATCAACCAAAGCTCAGCACTGAAGATGAAACTTCAGATTCTGAATCTTCAGGGCTTGATTTGACACTTAAGCTTTGA 879 0.3948 MASESSSPSVTSQNHGDSSETKNMVDKKEIEQGQSSKSNSNMPINFVKLSKEASVDGSKVQAHNLFSHIQVGGSSSHSPNTDNEKKGEKTIEGKNSASKVSYACKFCKREFPTLQALGGHQNAHKAERALENQREQRYINNALGLGQIHLNPTYFCYPSSNSPYGSLGVRMDSMIQKPSFFSPRVTPNNLAYSHGGVGGVCLRNSMEGSSRVGILGGATSTRIENGANNKIAAFLKLGESSKDVATNSNSIIERNFFVAPAPVKDDIHQPKLSTEDETSDSESSGLDLTLKL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06867 292 Gene3D Classic Zinc Finger 75 144 - -
Vivi3g06867 292 MobiDBLite consensus disorder prediction 69 94 - -
Vivi3g06867 292 Pfam C2H2-type zinc finger 102 126 - -
Vivi3g06867 292 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Vivi3g06867 292 MobiDBLite consensus disorder prediction 1 43 - -
Vivi3g06867 292 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vivi3g06867 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vivi3g06867 292 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 292 IPR044246 GO:0009788
Vivi3g06867 292 MobiDBLite consensus disorder prediction 267 292 - -
Vivi3g06867 292 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06867 Vivi-Chr3 194383555 194384433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06867 94 140 C2H2 Transcription Factor Family AT5G01860 57.447 2.60e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g06867 zf-C2H2_6 2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06867 - - tpra:123915384 271.166