Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06866 ATGGCATCCGAATCCTCTAGCCTCTCAGTCACTTCACAAAATCATGGTGATTCTTCCAAAACAATAAACGTGGTGGTTGACAAGAAGGAGATTGAACAAGATCAATCTTCAAAATCTGATTCCAACATGCATATTGATTTTGTGAAGCTATCGAAGGAGGATTCGGTTGACGGGTCAAAGGTGCAAACGCACAATTTTTTTAGCCATATTCAAGTTGGTGGTTCGTCGTCTCATTCTCCAAATACTGACAATGAAAAGAAAGACGAGAAAACCACTGAAGAGAAGAATTCGGCGGCAAAAGTATCTTACGCATGCAAATTTTGCAATAGAGAATTTCCTACTTTACAAGCGTTGGGAGGGCACCAAAACGCCCATAAGGCAGAACGTGCTTTAGAAAAACAACGTGAACAAAGGTACGTAAATAATGCTTTAGGGTTAGGGCAAACTCACTTGAACCCTACTTACTTTCGTTATCCTAGTTCTCGTTCACCTTATGGATCACTCGGGGTTAGAATGGATTCGATGATTCAAAAACCACCTTTTTTTAGCCCTAGGGTTACACCAAATAATTTTGCGTATAGTCATGGTGGTGCTGGTGGTGTGTGTTTGAGAAATAGTATGGAAGGCAGTAGCAGGGTTGGAGTTCTAGGTATTGGTGGTGCAACTTCTTCTAGGACTGAAAATGGCGCAAATAATAAAATTGCTGCTTTTCTAAAACTTGGAGAGTCTTCTAAAGATGTTGCCACAAGCTCAAACTCAGTCATAGAGAAGAATTTTTTTGTGGATGCTGCTCCTATCAAAGATGAAATTCATCCACCAAAGTTGAACACTGAAGATGAACCTTCAGATTCTGAATCTTCTCGGCTTGATTTGACACTTAAGCTTTGA 888 0.402 MASESSSLSVTSQNHGDSSKTINVVVDKKEIEQDQSSKSDSNMHIDFVKLSKEDSVDGSKVQTHNFFSHIQVGGSSSHSPNTDNEKKDEKTTEEKNSAAKVSYACKFCNREFPTLQALGGHQNAHKAERALEKQREQRYVNNALGLGQTHLNPTYFRYPSSRSPYGSLGVRMDSMIQKPPFFSPRVTPNNFAYSHGGAGGVCLRNSMEGSSRVGVLGIGGATSSRTENGANNKIAAFLKLGESSKDVATSSNSVIEKNFFVDAAPIKDEIHPPKLNTEDEPSDSESSRLDLTLKL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06866 295 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g06866 295 MobiDBLite consensus disorder prediction 270 295 - -
Vivi3g06866 295 SUPERFAMILY beta-beta-alpha zinc fingers 101 131 IPR036236 -
Vivi3g06866 295 Gene3D Classic Zinc Finger 76 148 - -
Vivi3g06866 295 MobiDBLite consensus disorder prediction 22 44 - -
Vivi3g06866 295 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 295 IPR044246 GO:0009788
Vivi3g06866 295 MobiDBLite consensus disorder prediction 81 95 - -
Vivi3g06866 295 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vivi3g06866 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vivi3g06866 295 MobiDBLite consensus disorder prediction 1 44 - -
Vivi3g06866 295 Pfam C2H2-type zinc finger 103 127 - -
Vivi3g06866 295 MobiDBLite consensus disorder prediction 70 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06866 Vivi-Chr3 194307378 194308269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06866 95 201 C2H2 Transcription Factor Family AT5G01860 40.541 1.38e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g06866 zf-C2H2_6 1.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06866 - - tpra:123915384 273.478