Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06857 ATGGCGACGCCGTTAGACGGCGGAGGAGTGGCGGTTCTAACGAACTCCGCGAACAAAGTCGATTCCTCTTCGGCGCTTAATGGCGGTTTGAAGTGCTCCAAACTCGACTCGCCGATTTTGATTTTCTTGTTCTTTCATAAAGCGATTCGGAATGAGCTTGACGTTTTGCACCGATTAGCCATGGCATTTGCTACCGGTAATCGCTCTGATATTCAGCCGCTAATCGAGCGTTACCGTTTTCTCAGTTCCATTTACAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCCGCTCTAGATAGACGTGTGAAGAATGTTGCAAAAACTTATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTTCTGTCAAGAATGACGAAAGTTTTCCCAGAGAGTTAGCATCTTGCACAGGAGCCTTACAGACATCAGTTAGTCAACACTTGGCAAAGGAAGAGGAACAGGTTTTTCCTCTACTTATTGAGAAGTTCTCTCTTGAGGAACAAGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCAGATGAATCTCAGGATTTACGAGATTTCTTAATCAAGATTGTGCCAGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACTTGGATGGAAGGGAGAAGTAGTGTTAATACAATTCAAAGTAGTGCAGATCATTCTCAAGTTCAATGTTGTTCTAGCCCGTTAACCCATCAGGCTGGAAGAGTCAATTGTGTATGCGAATCCACAACAACAGGAAAAAGGAAACATTCTGGATCTATGCTAGATGTTTCTGATGCCACCGGAACACACCCTATAGATGAGATATTGCTCTGGCATAATGCAATAAAAAAAGAGCTAAGTGAGATAGCAGTGGAGACCAGAAGGATACAACACTCTGGAGATTTTACTGACATATCAGCTTTTAATGACAGATTGCAATTCATTGCTGATGTTTGCATATTTCATAGTATTGCTGAGGACAAGGTTATTTTTCCGGCGGTGGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCAGCATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTAGCGAGAAAGCACTTCAGCTTTAGAAGACAATGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGAGAGTCCTACCATGGTTGGTAAGATCTTTAACAGAAGAAGAAGCAAATATGTTTCTGAGAAACATGCAATTTGCAGCTCCAACAGCAGATTCTGCTCTAGTCACCCTCTTCAGTGGTTGGGCATGCAAGGCTCGTAATGAAGGCCTGTGTCTGTCTTCAGGCACATCAGACTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAGATATTGATCAGCCATCCTGTTTTTGTTCCTCTGCATCATCTTGCAGACATTGCTCAGTAATACTTGAGTCAGATGGCAACAAAAGACCAGTCAAGCGAAACGCATTGAAGTTGAGCAATGGAGATGTACCTGAAACTTTGGAGAGTGAAAGTATCCAGAAACAGTGCTGTAGTCCCCGGTCTTGTTGTGTACCAGGTTTAGGAGTAAACAGTAACAATTTGGGGCTTAGTTCAGTTTCGACAACGAAGTCCTTACGCTCTTTGTCTTTCAGCTCTTCTGCTCCTTCTCTTAATTCCAGCCTTTTCATATGGGAAGCAGAGAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGACAGTGACGAGACAGTTATTAGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATGTGAGCCATTCATACATGTTAGACCATAAGCAAGAAGAACAATTGTTTGAAGATATTTCTTGCGTTCTTTCTGAATTTTTTGTCCTTCATGAAGCCTTGCAGTTGACCCATATGGCAGGGGATTTGGGTGATAGTAATTTTGGAACTTCTGATGCAAATGATAGTGATGATGTCAAGAAGTATAACGAACTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGTGTGAACTGTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGACGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCATGGGTAACTTCTGCACTTACTCAGGATGAGCAGAATAAAATGATGGATACGTGGAAGCAGGCAACTAAGAATACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCGGAATCTATAACACAGACAGAAACATCACATTGTAGCACTTCTCACAGAGGTTCTGAGTATCAGGAATGCTTGGACCACAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGACTGAACTTGAGTCAGAGATTCGGAAGGTTTATCGTGACTCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTTTGACAAGTCGTTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTCCATCTGAAGAAGGATCATCTAATGGTGTTGAAATAGAAGGACACTCACCATCATTTCGGGACCCTAGGAAACTTGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTTAATTGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCATGAATATACAGCCAATTGGGCCTATTTGTATGACACCTTCATGTAACGCACTTTCAATGGCAAAGTACTATTGCAGTATATGCAAATTTTTTGATGATGAAAGGAATGTATACCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTAGGGATTGATTATTTTCATTGCATGAAATGCAATTGCTGCCTGGGGATTAAAACATCATCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATATGCTGTGATGACTTGTTCACGTCAAGTGCTACAGTCAGAGGTCTGCCCTGTGGCCACTACATGCATTCTGCTTGCTTTCAGGCCTACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTTGGTATGCTTGATGCCTTATTGGCTGCAGAGGAGCTTCCTGAAGAGTATAGGGACCGCTATCAGGACATACTTTGCAATGACTGTGATCGAAAGGGAACTTCACGCTTCCACTGGTTGTATCACAAATGTGGGTCTTGTGGTTCTTACAATACTCGGTTGATCAAGCGCGAGACACGTTGA 3696 0.4156 MATPLDGGGVAVLTNSANKVDSSSALNGGLKCSKLDSPILIFLFFHKAIRNELDVLHRLAMAFATGNRSDIQPLIERYRFLSSIYRHHSNAEDEVIFPALDRRVKNVAKTYSLEHKGESNLFDHLFELLNSSVKNDESFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISADESQDLRDFLIKIVPEERLLQKVVFTWMEGRSSVNTIQSSADHSQVQCCSSPLTHQAGRVNCVCESTTTGKRKHSGSMLDVSDATGTHPIDEILLWHNAIKKELSEIAVETRRIQHSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESILSEGAASNSEVEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVRSLTEEEANMFLRNMQFAAPTADSALVTLFSGWACKARNEGLCLSSGTSDCCPAQRLSDIEEDIDQPSCFCSSASSCRHCSVILESDGNKRPVKRNALKLSNGDVPETLESESIQKQCCSPRSCCVPGLGVNSNNLGLSSVSTTKSLRSLSFSSSAPSLNSSLFIWEAESSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDSDETVIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFFVLHEALQLTHMAGDLGDSNFGTSDANDSDDVKKYNELATKLQGMCKSIRVTLDQHIFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESITQTETSHCSTSHRGSEYQECLDHNDQMFKPGWKDIFRMNQTELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKAPSEEGSSNGVEIEGHSPSFRDPRKLVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHLIDRKATSEMMCMRCMNIQPIGPICMTPSCNALSMAKYYCSICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKTSSHKCLEKGLEMNCPICCDDLFTSSATVRGLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRLIKRETR 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06857 1231 SMART ring_2 1120 1161 IPR001841 -
Vivi3g06857 1231 Pfam Hemerythrin HHE cation binding domain 295 429 IPR012312 -
Vivi3g06857 1231 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Vivi3g06857 1231 Pfam Hemerythrin HHE cation binding domain 643 805 IPR012312 -
Vivi3g06857 1231 MobiDBLite consensus disorder prediction 955 979 - -
Vivi3g06857 1231 Pfam Ring finger domain 1119 1161 IPR001841 -
Vivi3g06857 1231 Gene3D nmb1532 protein domain like 639 881 - -
Vivi3g06857 1231 ProSiteProfiles Zinc finger CHY-type profile. 984 1053 IPR008913 GO:0008270
Vivi3g06857 1231 CDD Hr-like 645 805 - -
Vivi3g06857 1231 Pfam CHY zinc finger 991 1066 IPR008913 GO:0008270
Vivi3g06857 1231 FunFam RING finger and CHY zinc finger domain-containing protein 1 1190 1231 - -
Vivi3g06857 1231 SUPERFAMILY Zinc hairpin stack 1057 1113 IPR037275 -
Vivi3g06857 1231 Gene3D nmb1532 protein domain like 35 187 - -
Vivi3g06857 1231 Gene3D nmb1532 protein domain like 298 445 - -
Vivi3g06857 1231 CDD Hr-like 298 427 - -
Vivi3g06857 1231 ProSiteProfiles Zinc finger RING-type profile. 1120 1162 IPR001841 -
Vivi3g06857 1231 FunFam Zinc finger protein-related isoform 1 1115 1164 - -
Vivi3g06857 1231 MobiDBLite consensus disorder prediction 955 975 - -
Vivi3g06857 1231 Pfam Zinc-ribbon 1167 1224 IPR039512 -
Vivi3g06857 1231 CDD Hr-like 41 167 - -
Vivi3g06857 1231 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 1228 - -
Vivi3g06857 1231 SUPERFAMILY CHY zinc finger-like 986 1047 IPR037274 GO:0008270
Vivi3g06857 1231 Gene3D - 1191 1230 - -
Vivi3g06857 1231 ProSiteProfiles Zinc finger CTCHY-type profile. 1056 1119 IPR017921 -
Vivi3g06857 1231 SUPERFAMILY RING/U-box 1118 1165 - -
Vivi3g06857 1231 CDD RING-H2_Pirh2-like 1119 1162 - -
Vivi3g06857 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06857 Vivi-Chr3 193918995 193931897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06857 37 1230 C2H2 Transcription Factor Family AT3G18290 68.750 0.0 1682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06857 K16276 - gmx:100801725 2192.93