Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06853 ATGGCTTCCAAACGTCTTTTTGATGATTCTGATCAAGACAAACACAAACGTATCAGAACTTCAACAACACCTTCTTTAGCTTCTGTAATGGGAGAAATTGTTATGGTGAGAAATATGCAAAATCTTTTCTCTGGCTTGGAACCATTACTTAGAAGAGTGGTGAACGAAGAAGTGGAACGAGCAATGAGGCAATGTTATACATCGCGGTCAATAACAAAGTCGCCTTCATTGAGACTTGAAGCAATGGAACATCCATCAAGTTTTCAATTCAATTTCAAAAAGAAGCTTCCACTTTCAATATTCACAGGTAGTAGATTACTAGACATGGATGAAAACTCAATCAATGTCATTCTTGTTGACAAAAGCAATGGCCAAAATGTTCCTACGAGTCTACCTCACCCAATCAAGATAGAAATTGTTGTTCTTGATGGAGACTTTCCATCTAGTGAAAAGGAATCATCATGGACTAGTGAAGAATTCAATAGTAATATTGTGAAAGAAAGAACCGGGAAGAGACCATTGCTTACCGGAGAATTGAATCTTACTATGAGAGACGGAATTGCACCGATTGGAGACATTGAGTTCACCGATAATTCAAGCTGGATTCGTAGCAGAAAGTTTAGACTTGGCGTTAGAATTGCTCAAGGGACTAATCAAAATGTTCGAATTCGTGAAGGCATGACCGAACCTTTTGTTGTTAAAGATCATCGCGGAGAATTGTACAAGAAACACCACCCACCAAGTCTAAATGATAAAGTGTGGCGTTTAGAGAAGATTGGAAAAGACGGAGCTTTTCACAAAAAATTGACTACAGCAAAAATCACAACAGTTCAAGAGTTTCTCAAATTATCTGTAGTTGATCCTCAGAGACTCAGAAAGATATTAGGCATTGGAATGTCAGAGAAAATGTGGGATGCAACAATGAAACATGCAAAGACTTGTGTCATGGGAAACAAACTTTATGTCTACCGTGGTCCTCAGCTTACCATTTATCTGAATGCCATATGTCAAATGGTTAGAGCTTATAACATCAATGGCCAAACCATTCCCAACAGAGACATTAGCAACATCAACAAGAACTACATGCAAAATTATGTGAGAGAAGCATATGATAGATGGAATGAGTTGGAGGAAATTGATGAAGCTTTGAATGATAATGTTGCTTTGTTAACTCAAGGTGAAAGTGTGGAAAAATTTCAAAACATTAATCATCAAGCATCATATGAGCAGAATGACTTTTTTGTTGATAAATCTGGTTGCATAGAATGGTCACCATTTGCCACGTCATCGTTGGTGAATGGAATAGCTTATAGCTTCTCGGGAGCAATCATTGATGATGGAACCTTAAGGTGGCATTAG 1359 0.3782 MASKRLFDDSDQDKHKRIRTSTTPSLASVMGEIVMVRNMQNLFSGLEPLLRRVVNEEVERAMRQCYTSRSITKSPSLRLEAMEHPSSFQFNFKKKLPLSIFTGSRLLDMDENSINVILVDKSNGQNVPTSLPHPIKIEIVVLDGDFPSSEKESSWTSEEFNSNIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRLGVRIAQGTNQNVRIREGMTEPFVVKDHRGELYKKHHPPSLNDKVWRLEKIGKDGAFHKKLTTAKITTVQEFLKLSVVDPQRLRKILGIGMSEKMWDATMKHAKTCVMGNKLYVYRGPQLTIYLNAICQMVRAYNINGQTIPNRDISNINKNYMQNYVREAYDRWNELEEIDEALNDNVALLTQGESVEKFQNINHQASYEQNDFFVDKSGCIEWSPFATSSLVNGIAYSFSGAIIDDGTLRWH 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06853 452 PANTHER OS02G0177800 PROTEIN 1 403 IPR012416 GO:0005516
Vivi3g06853 452 Pfam Calmodulin binding protein-like N-terminal domain 89 236 IPR046831 -
Vivi3g06853 452 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g06853 452 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g06853 452 Pfam Calmodulin binding protein C-terminal domain 319 379 IPR046829 -
Vivi3g06853 452 Pfam Calmodulin binding protein central domain 248 314 IPR046830 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06853 Vivi-Chr3 193804580 193807243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06853 4 380 Calmodulin-binding Proteins AT4G25800 47.906 1.39e-114 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06853 - - gmx:100802257 598.201