Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06852 ATGGCTTCCAAACGTCTTTTTGATGATTCTGATCAAGACAAACACAAACGTATCAGAACTTCAACAACACCTTCTTTAGCTTCTGTAATGGGAGAAATTGTTATGGTGAGAAATATGCAAAATCTTTTCTCTGGCTTGGAACCATTACTTAGAAGAGTGGTGAACGAAGAAGTGGAACGAGCAATGAGGCAATGTTATACATCGCGGTCAATAACAAAGTCGCCTTCATTGAGACTTGAAGCAATGGAACATCCATCAAGTTTTCAATTCAATTTCAAAAAGAAGCTTCCACTTTCAATATTCACAGGTAGTAGATTACTAGACATGGATGAAAACTCAATCAATGTCATTCTTGTTGACAAAAGCAATGGCCAAAATGTTCCTACGAGTCTACCTCACCCAATCAAGATAGAAATTGTTGTTCTTGATGGAGACTTTCCATCTAGTGAAAAGGAATCATCATGGACTAGTGAAGAATTCAATAGTAATATTGTGAAAGAAAGAACCGGGAAGAGACCATTGCTTACCGGAGAATTGAATCTTACTATGAGAGACGGAATTGCACCGATTGGAGACATTGAGTTCACCGATAATTCAAGCTGGATTCGTAGCAGAAAGTTTAGACTTGGCGTTAGAATTGCTCAAGGGACTAATCAAAATGTTCGAATTCGTGAAGGCATGACCGAACCTTTTGTTGTTAAAGATCATCGCGGAGAATTGTACAAGAAACACCACCCACCAAGTCTAAATGATAAAGTGTGGCGTTTAGAGAAGATTGGAAAAGACGGAGCTTTTCACAAAAAATTGACTACAGCAAAAATCACAACAGTTCAAGAGTTTCTCAAATTATCTGTAGTTGATCCTCAGAGACTCAGAAAGATATTAGGCATTGGAATGTCAGAGAAAATGTGGGATGCAACAATGAAACATGCAAAGACTTGTGTCATGGGAAACAAACTTTATGTCTACCGTGGTCCTCAGCTTACCATTTATCTGAATGCCATATGTCAAATGGTTAGAGCTTATAACATCAATGGCCAAACCATTCCCAACAGAGACATTAGCAACATCAACAAGCAGAACTACATGCAAAATTATGTGAGAGAAGCATATGATAGATGGAATGAGTTGGAGGAAATTGATGAAGCTTTGAATGATAATGTTGCTTTGTTAACTCAAGGTGAAAGTGTGGAAAAATTTCAAAACATTAATCATCAAGCATCATATGAGCAGAATGACTTTTTTGTTGATAAATCTGGTTGCATAGAATGGTCACCATTTGCCACGTCATCGTTGGTGAATGGAATAGCTTATAGCTTCTCGGGAGCAATCATTGATGATGGAACCTTAAGGTGGCATTAG 1362 0.3789 MASKRLFDDSDQDKHKRIRTSTTPSLASVMGEIVMVRNMQNLFSGLEPLLRRVVNEEVERAMRQCYTSRSITKSPSLRLEAMEHPSSFQFNFKKKLPLSIFTGSRLLDMDENSINVILVDKSNGQNVPTSLPHPIKIEIVVLDGDFPSSEKESSWTSEEFNSNIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRLGVRIAQGTNQNVRIREGMTEPFVVKDHRGELYKKHHPPSLNDKVWRLEKIGKDGAFHKKLTTAKITTVQEFLKLSVVDPQRLRKILGIGMSEKMWDATMKHAKTCVMGNKLYVYRGPQLTIYLNAICQMVRAYNINGQTIPNRDISNINKQNYMQNYVREAYDRWNELEEIDEALNDNVALLTQGESVEKFQNINHQASYEQNDFFVDKSGCIEWSPFATSSLVNGIAYSFSGAIIDDGTLRWH 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06852 453 Pfam Calmodulin binding protein-like N-terminal domain 89 236 IPR046831 -
Vivi3g06852 453 PANTHER OS02G0177800 PROTEIN 1 404 IPR012416 GO:0005516
Vivi3g06852 453 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g06852 453 Pfam Calmodulin binding protein C-terminal domain 319 380 IPR046829 -
Vivi3g06852 453 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g06852 453 Pfam Calmodulin binding protein central domain 248 314 IPR046830 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06852 Vivi-Chr3 193804538 193807254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06852 3 381 Calmodulin-binding Proteins AT5G57580 47.396 7.39e-114 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06852 - - gmx:100802257 593.578