Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06848 ATGACTACCTTCCTCTTCCTTGCATCCATATTCTTCACCATTGTTTTCTTCTCAACAACTTTGCCACAATCAAACTCTCAAAAAAATGACACATTTTCTACTTGCAACCAATCCTTTTTCACATGTGGAACACACACAAATGTTTCATTTCCTTTTTGGGGAAAGAACCGACCAAACTTTTGTGGCAAAGATGAGTTCAAACTCACTTGCATGCATAATGAAAACACCTCTATTCAAATTGGTTCACAAAGATTCAATGTACTAAACATTAACCAGAATGTTTCTACCATGAGAATCGTTCGAACTGATCTTGTCAATGATATCTGTTCTTCGAATTTCACCAACACTTCTTTGGTTGGAACTCCCTTTAGTTTTCTTCCAACGGTTCGAAATCTCACTATATTCTATGATTGTCCTATTGAGAGTAGTTCGGTTATGAAAAACATAAACACTTTTACATGTGAGAAAAATGGTAGCAATGGACATGTTTTCTATGTTGTCAATAATGAAACTCAGCTGCAAAACCAGTTCTCAGGATTTCGGAACTGTCGTGTTAGTTTTCAAGTTGAAGTTTCTAAGGATGTTGTTTGGGATTCTGAGAGTGGAGTTCATACGCTGGAACAAGGTTTTGATGTGATGTTTGATGAAGGTGTAGGGTGGTCCTCTCAGTGTGATGGTTGTAGAGAATCTGGAGGAACATGTGGTACAAATCAGAATGATTCTTCCAAATTTTCTTGTTACTGTCCTTCTGGAAGTGGAACTCATCATGATGCTGCAAAGTGTTCTTCTTCTCACAAAAGTAGTAAGAAGACCAAAGTGTTGAAGCTTGTTATAGGATTCATAGCTACTGGAATGTTATTACCACTCATTGCTGTCACAATATGTAGAAATAAAGAGAAAATATGGAAGATTATATTGATACAATTCAGCAAAATAACAAGGAATAATCAACATATAGAAGCTTTTCTTGAAAGTCAAGGTCCTTTGAATCTAAAAAGATACAAATACTCTGATGTAAAGAGAATGACAGAAAATTTCAAAGTTAAACTCGGAGAAGGTGGTTATGGTTCGGTGTACAAAGGAAATATGAATGGTTGTGCGGCCGCGGTGAAAGTATTGAATGAATCAAAAGGGAATGGTGAAGATTTCATCAATGAAGTTGCAAGTATTTGCAAAACATCACATGTTAATGTTGTCACACTTTTAGGATTTTGTCTTGATGGAACCAAAAAAGCTCTTATTTATGAGTTTATGCCAAATGGTTCGCTTGAAAAGTATATTCATAATTCCAACAAAGAATCCGGGATGACTGAAAAGACTAAAACTAGTCCTAATCCGTCGTTGAGTTGGGAGAATTTGCACCAGATTGCGATAGGGATCGCTCGAGGACTAGAGTACTTGCATAAAGGATGTAACACTCGGATTCTACATTTTGATATTAAACCACATAACATTCTTCTAGACGAAACATATCATCCAAAGATATCGGATTTTGGACTTGCTAAATTAAGCACGAGGGACGAGAGCGTTATTTCGATGTCAAACGCTAGAGGGACGGTCGGGTATGTAGCACCTGAAGTTTTCAACAAAAGCTTCGGAGGTGTTTCACATAAGTCTGATGTTTATAGTTACGGAATGATGCTTCTTGAAATGATTGGAGGACGGAAGAACGTTAACATTGTTGAAGCAAGTAGTCAGTCGAGCGAGATGTATTTTCCGCATTTGGTGATTTATAAGAAGCTTGAAGACGGGAATGATTTGGAACTTGATGACGAGGTAATGTCGAATGAGGAAAATGAGATAGCTAAGAAATTGACTATGGTTGGTTTATGGTGCATTCAAACAATTCCAACTCATAGACCTACAATGAGTAGAGTTATTGATATGTTGGAAGGTAACATGGATTCTTTGGAAATGCCACCAAAACCTGTTATGTTTTCTCCTCCAAGATCAATACCGGAATTTTCAACATCATCAAAATCATTGGAAAGTTTCTCAGGTTAA 2004 0.3688 MTTFLFLASIFFTIVFFSTTLPQSNSQKNDTFSTCNQSFFTCGTHTNVSFPFWGKNRPNFCGKDEFKLTCMHNENTSIQIGSQRFNVLNINQNVSTMRIVRTDLVNDICSSNFTNTSLVGTPFSFLPTVRNLTIFYDCPIESSSVMKNINTFTCEKNGSNGHVFYVVNNETQLQNQFSGFRNCRVSFQVEVSKDVVWDSESGVHTLEQGFDVMFDEGVGWSSQCDGCRESGGTCGTNQNDSSKFSCYCPSGSGTHHDAAKCSSSHKSSKKTKVLKLVIGFIATGMLLPLIAVTICRNKEKIWKIILIQFSKITRNNQHIEAFLESQGPLNLKRYKYSDVKRMTENFKVKLGEGGYGSVYKGNMNGCAAAVKVLNESKGNGEDFINEVASICKTSHVNVVTLLGFCLDGTKKALIYEFMPNGSLEKYIHNSNKESGMTEKTKTSPNPSLSWENLHQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYHPKISDFGLAKLSTRDESVISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMIGGRKNVNIVEASSQSSEMYFPHLVIYKKLEDGNDLELDDEVMSNEENEIAKKLTMVGLWCIQTIPTHRPTMSRVIDMLEGNMDSLEMPPKPVMFSPPRSIPEFSTSSKSLESFSG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06848 667 MobiDBLite consensus disorder prediction 648 667 - -
Vivi3g06848 667 ProSiteProfiles Protein kinase domain profile. 344 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06848 667 Gene3D Transferase(Phosphotransferase) domain 1 418 640 - -
Vivi3g06848 667 Pfam Wall-associated receptor kinase C-terminal 154 250 IPR032872 -
Vivi3g06848 667 SMART serkin_6 344 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06848 667 ProSitePatterns Protein kinases ATP-binding region signature. 350 371 IPR017441 GO:0005524
Vivi3g06848 667 Pfam Wall-associated receptor kinase galacturonan-binding 35 101 IPR025287 GO:0030247
Vivi3g06848 667 Pfam Protein kinase domain 347 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g06848 667 Gene3D Phosphorylase Kinase; domain 1 318 417 - -
Vivi3g06848 667 FunFam PR5-like receptor kinase 418 642 - -
Vivi3g06848 667 PANTHER RUST RESISTANCE KINASE LR10-RELATED 308 652 IPR045874 GO:0004672
Vivi3g06848 667 MobiDBLite consensus disorder prediction 651 667 - -
Vivi3g06848 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vivi3g06848 667 SUPERFAMILY Protein kinase-like (PK-like) 324 631 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06848 Vivi-Chr3 193752726 193756771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06848 40 666 Receptor kinase-like Gene Family AT1G66910 39.663 2.57e-146 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi3g06848 Pkinase 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06848 - - gmx:100816285 876.7