Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06788 ATGGCAGGACTGATGGTTGCAGGAGCATTTCTTACACCTGTCATTCAAGTCATTGTTGAAAGTGTTGCCTCAAGAGATTACAAAGACCTCTTCATTAAACGGTCGGTGAATAAACTTAAAATTAGATTGAATTCAATCCAAAAAGTGTTGGATGATGCAGAGGCAAAACAATACCATGACGAAAGAGTGAGGTTTTGGCTTGATAAACTAAAACATGTGGTATATGAAGTAGAACAACTGTTGGACGAGATTGCTACAAGTGCACAACGAAAGTCCAAGGTTCATCTCTTTCGTTTAGTTAGCCGATTTAAACCTAAGATCAAAGATTTGCTAAACAACCTAAAAGTTCTTTTAGACGAAAAGGATTCGCTGAATTTGAATGAAGGAATATTTGCTCGTAATGAACTTTCAGAAAGAGTGCCAACGACGTCTTTGGTGGATGAATCTAGCAAATATGGTAGACATCGTGAAAAAGAGGAAATTATCAGTTTCTTACTTTTAGACAATGGTAGTAGTAGCAGCAACCAAGCACCAATAATCAGCATAGTTGGTCTTGCTGGGATGGGTAAGACCACCCTGGCTCAGCTTGTCTACAAAGACCACAGGGTGCAAAAGAACTTTGATCTTAAAGCTTGGGTCTATGTTTCAGAATCATTTGATGTTATTGGACTCACTAAAGCAATTCTCGAGTCATTTGGTTCTTCGCCAAACACTGAAAATCTAGATCGACTCCAATGTCAACTGCAGGAAGAGATAACAGGAAAGAAATGTTTGCTTGTTCTAGATGATATCTGGAAAGTAGACCGGGAAAGTTGTGAGAAGTTACTAAGTTTTTTTAACGAAGGATCTTCAGGAAGTAAGATTATTGTGACAACACGAAATCAGAAGAATGCATCTGCCATGGAATCTAAGTTTTTTGAATTATTTCAATTGGGAGAGAGTGATTCTTGGAGTTTATTTGAGAGACATGCTTTTCCAAACAAAAAAGGGAGTGAATATCCATATCTTGAACCAATTGGAAAAAAGATTGTAGGCAAGTGTGGAGGGTTGCCATTAGCCGTGATAACTATGGGGAAACTCTTGAGAGCAAAATTCTCTCAAAGTGAATGGAATGAAATATTGGAGGATGATATGTGGGGTTTATCAGAGAAAGACAGTGGCATAAATCCAGTATTGAGACTGGGTTACCATAATCTTCCTTCTAATTTGAAGCCTTGTTTTGCATACTGCTCAATATTTCCCAAGGGTTATAAGTTTGACAAGAACAAGTTAATCAAAATGTGGATGGCAAATGGTTTGCTGAATTCCTACAAAAGTGACAAAAGTAAAGAAAAGTTGGGTAGTGAATTATTCAACGTTCTTGAGTCAATTTCATTTTTCCAAAAATCACAAGATTTTGATGGTGGTTTTACCATGCATGATCTTGTCAATGACTTGGCAAAATCAATGTCTAGAGAGTTTTGCTTACAAGTAGAGGATGATAAGAAGGTAAATCACATTTCTAAACGGACACGCCACATTTGGTTCTCTTTTGATTCGGAAGATGGGGATAGAATATTAAAGCACACTTATAGAAGTAAGGGATTGCATAGCTTGTTGGTAGAACCAAAAAGTTACAAATGGACCGAGATAAGCAATAATGTGCAATGTGATATATTTTCAAAACTAAAATATTTGCGGATGTTGTCATTTCTTGGTAGTAGGTCTTTACTTACAGAGTTAGAGCTAGCAGATGAGATAGGCAATTTAAAGTTTTTGCGCTATCTAGACGTGTCTTGGACAAGTATTGTAAGGTTGCCTAATTCTATTTGTAAGCTTTACAATTTAGAGTCATTGATATTGGAAGGGTGTTCTAATTTGACTGAATTTCCTTTAGATTTTTTCAAACTTGACCGTTTACGCCATCTTAATCTAAAAGGGTCTGCAATAAAGAAGATGCCAAAGAACATAAGGGAACTAAACCATCTACAAACATTGACTAACTTTATTGTGGAAGAGTCAAGTGGGTCTGATATTGAGGAGTTAGAAAGTCTCAATCTTCTTCAAGGAAAACTTTGTCTTTCAGGATTGAACAATGTCACTGATCCAACACATGCCGTAAAGACCCGTTTGCAAGATAAGAAGTTTTTAGAAAAAATACATATGATATTTAATGGTTCAGTAGTTGACAGCAATGTGTATGTCTTGGATGCCCTTCAACCAAATAATAATCTGAAAAGGCTCATCATTGAGAACTACAATGGCGATATGTTTCCAAATTGGCTAAGTGGTTGTGATTTACCCAACTTAATATCTCTTAAACTCAAGAACTGTAAAGGAATAAAGATCATTGGCAATAACTCAACAAATGTCCCGTTCAAGTTCCTTGAAGTTTTGGTATTTGACCGCATGTATGAGTGGGACGAATGGTTATGTATTGATGAGTTTCCTATGCTTAAAGAGCTTTACATAAGAGATTGTCCCAAATTGAAAGGGGTACTGCCTCAACACCTTCCTTCATTACAGAAATTGGTGATTTTCGGTTGCAAAATGTTGGACGTATCAATTCCCAATTGTGATAATATCATAGAGTTACATATATGGAGATGTGATCGAATTTTGATAAACAAGTTGTCATCCAGCTTGAAAAAGTTTGTCCTTCATGAAAATCAATATGTTGAGTTCTCCATGGATCATTTAATCAACAGTCCCTTTCTGAAAGTGTTGGCGTTGGATTTCAAGGACTTTGTAGAATGTCCCTCTTTAAATTTGCGTTGTTATAATTCTCTGTCGGAACTTTCAATAAGTGGATGGCGGTCCTCCTCCTTGCCTCTTTCACTACACTTGTTCACTAATCTGGATTCTCTCATATTGTCAGATTGTACAAGGCTGGAGTCTTTTCCTATGGGAGGGTTTCCTTCCAACTTGAGGTATCTTGAAATTCATAATTGCCCAAAACTAATTGTTAGTGATGATTTTGAAAACGAGGAGTGCTTCCCCGAGCAGAATCTACTGCCACCAACTCTGAATGTTCTTACCTTGGCTAAATGTTCAAAGCTAAGAATATTGAACAACAAGGGATTTCTCCACCTCAAAACTCTTAGTCATATACGGATTGACAGCTGCCCTAGTCTTGAGAGCTTGCCAGAAGAAAGTCTACCCAACTCACTTAAAATGTTGACGATTAGTAGATGTCCATTACTTGAAGAGAAGTACAAAAAAGAGGGAGGAGAGCGTTGGCATACAATTAGTCACATCCCTGATGTGATGATTGACGGTATTCCTCAGCATTAG 3273 0.3715 MAGLMVAGAFLTPVIQVIVESVASRDYKDLFIKRSVNKLKIRLNSIQKVLDDAEAKQYHDERVRFWLDKLKHVVYEVEQLLDEIATSAQRKSKVHLFRLVSRFKPKIKDLLNNLKVLLDEKDSLNLNEGIFARNELSERVPTTSLVDESSKYGRHREKEEIISFLLLDNGSSSSNQAPIISIVGLAGMGKTTLAQLVYKDHRVQKNFDLKAWVYVSESFDVIGLTKAILESFGSSPNTENLDRLQCQLQEEITGKKCLLVLDDIWKVDRESCEKLLSFFNEGSSGSKIIVTTRNQKNASAMESKFFELFQLGESDSWSLFERHAFPNKKGSEYPYLEPIGKKIVGKCGGLPLAVITMGKLLRAKFSQSEWNEILEDDMWGLSEKDSGINPVLRLGYHNLPSNLKPCFAYCSIFPKGYKFDKNKLIKMWMANGLLNSYKSDKSKEKLGSELFNVLESISFFQKSQDFDGGFTMHDLVNDLAKSMSREFCLQVEDDKKVNHISKRTRHIWFSFDSEDGDRILKHTYRSKGLHSLLVEPKSYKWTEISNNVQCDIFSKLKYLRMLSFLGSRSLLTELELADEIGNLKFLRYLDVSWTSIVRLPNSICKLYNLESLILEGCSNLTEFPLDFFKLDRLRHLNLKGSAIKKMPKNIRELNHLQTLTNFIVEESSGSDIEELESLNLLQGKLCLSGLNNVTDPTHAVKTRLQDKKFLEKIHMIFNGSVVDSNVYVLDALQPNNNLKRLIIENYNGDMFPNWLSGCDLPNLISLKLKNCKGIKIIGNNSTNVPFKFLEVLVFDRMYEWDEWLCIDEFPMLKELYIRDCPKLKGVLPQHLPSLQKLVIFGCKMLDVSIPNCDNIIELHIWRCDRILINKLSSSLKKFVLHENQYVEFSMDHLINSPFLKVLALDFKDFVECPSLNLRCYNSLSELSISGWRSSSLPLSLHLFTNLDSLILSDCTRLESFPMGGFPSNLRYLEIHNCPKLIVSDDFENEECFPEQNLLPPTLNVLTLAKCSKLRILNNKGFLHLKTLSHIRIDSCPSLESLPEESLPNSLKMLTISRCPLLEEKYKKEGGERWHTISHIPDVMIDGIPQH 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06788 1090 SUPERFAMILY RNI-like 786 1063 - -
Vivi3g06788 1090 Gene3D - 20 119 - -
Vivi3g06788 1090 Gene3D - 131 307 IPR027417 -
Vivi3g06788 1090 Pfam NB-ARC domain 172 375 IPR002182 GO:0043531
Vivi3g06788 1090 Gene3D Ribonuclease Inhibitor 871 1069 IPR032675 -
Vivi3g06788 1090 Gene3D - 310 395 IPR042197 -
Vivi3g06788 1090 Gene3D - 396 483 IPR036388 -
Vivi3g06788 1090 PANTHER DISEASE RESISTANCE PROTEIN RP 36 864 IPR044974 GO:0006952
Vivi3g06788 1090 Coils Coil 36 56 - -
Vivi3g06788 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 410 IPR027417 -
Vivi3g06788 1090 Pfam Rx N-terminal domain 10 92 IPR041118 -
Vivi3g06788 1090 Coils Coil 107 127 - -
Vivi3g06788 1090 Gene3D Ribonuclease Inhibitor 525 870 IPR032675 -
Vivi3g06788 1090 SUPERFAMILY L domain-like 471 858 - -
Vivi3g06788 1090 PRINTS Disease resistance protein signature 347 361 - -
Vivi3g06788 1090 PRINTS Disease resistance protein signature 251 265 - -
Vivi3g06788 1090 PRINTS Disease resistance protein signature 179 194 - -
Vivi3g06788 1090 PRINTS Disease resistance protein signature 604 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06788 Vivi-Chr3 191806491 191848979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06788 575 659 WRKY Transcription Factor Family AT4G12020 38.372 7.69e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06788 - - vvo:131593170 1357.04