Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06747 ATGGCTGCAACTGCAACTATGATAGGAGGTGCTTTTCTCTCTGCATCTGTTCAAACCTTAGTTGAGAAACTTGCCTCAACTGAGTTTCTTGATTACATCCGAAACACCAAGCTGGATGTCTCCCTCTTGAGAAAGTTACAAACAACCTTGCTCACTCTTCAGGCTGTGCTGGATGATGCAGAAGAGAGGCAGATCAACAATCTTGCTGTCAAAAAATGGCTAGATGACTTGAAAGATGTTGTCTTAGATGCTGAGGATTTGGTCGGTGAAATAAGTTACGACTCCCTTCGATGCAAGATGGATAATACTAAAGCTGGAAACAAAACTAATAAGGTGTGGAACTTTCTTTCATCTCCTTTCAAAAACTTCTATAGAGATATCAATTCCCAATTGAAGATCATGTGTGAAACCCTTGAACCTTTTGCACAACATAAAGACACCCTTGGATTGCAAACAAAAAGTGCTAGAGTTTCTCGAAGACCACCTTCAAGTTCAGGGGTTAATGAATCTGTCATGGTCGGTAGGAATGATGATAAAGATACAATCATCAATATGCTTTTATCAGACTGTGGATCCAGCAAAAATAATAACTTAGGTGTTGTTGCAATTTTGGGTATGGGAGGTGTCGGAAAAACAACCCTTGCACAACTGGTGTACAATAATGAAAAAGTTAAACAACATTTTGATTTCAAAGTCTGGGTTTGTGTATCAGAGGACTTCGATGTTATGAGAGTAACCAAGAGCCTCCTTGAATCTGTTGTTAGAAATACCACATCTGTTGCTTCAAAGGTATGGGAAAGCGATAACCTTGATATTCTTCGAGTTGAATTAAATAAAATCACGAGGAAGAAAAGATTTTTGTTTGTGCTGGACGATTTGTGGAATGATAGTTACAATGACTGGGATGAGCTAGTAAGTCCTCTTGTTGATGGAAACCCTGGAAGTGCGGTGATTATAACAACGCGTCAACAAAAAGTTGCAGAGATGACAAAGACATTTCCTATTTATAAATTAGACCCTCTATCACATGAAGATTGTTGGTCTATACTCTCAAAACATGCATTGGGTAGTGATGAATATCGCGCCAATAAAAACACAGCCCTTGAAAAGATTGGTAGGAAGATTGCAAGAAAGTGTGGTGGATTGCCAATAGCTGCTAAAACTCTGGGAGGACTTCTACGCTCAAGGGTAGACACAATGGCGTGGACTGATATTTTGAACAGCAATGTATGGAACTTACCAAATGATAATATTATGCCTGCATTACATTTGAGTTACCAATATCTTCCCTCTCATTTGAAAAGATGTTTTGCATATTGTTCAATTTTTCCAAAAGATTATCCACTTGATAGGGAGAAATTGGTCTTGTTGTGGATGGCAGAGGGCTTCCTTGATTATTCTGACGAGGGAAAATTGCCAGAGGAAGTAGGTGATGGTTGCTTTGCTGAATTATTGTCTAGGTCCTTAATTCAACAATCAAATGATGGTGCTCGTGGAAAATTGTTTGTCATGCATGACCTTATTAACGACTTAGCTACATCCGTATCTAGAAAAATTTGTAGTAGGTTTGAATGTGGTGACATTCCTGAAAAGGTTCGTTATTTGTCGTATATTCAAGAAAATTATGATATTCCCATGAAGTTTAGACCGTTCTACAAATATAAATGCTTGCGAAGCTTCCTCCCCATTAATCCTCGGTTGACATTCAATCACTTATCCATCATGGTGGTTGAGGATCTGCTACCACAATTTAAAAGGTTGCGCGTGTTATCGCTATCAAAGTATAGAAACATCACCAAGATACCATATTCAATTGGAAATTTGGTGCAATTGCATTATTTAGATCTTTCCAACACTGAAATCAAAAGCTTGCCTGAGACAATATGTAACCTCTACAATTTGCAAACTTTGAATTTATTAGGTTGCTACAGTCTCACTGAATTGCCAGTTCATATGGGAAATTTAATCAGCTTACGTCACCTTGATATACGTGGGACTGCCATAAAAGAGTTGCCTATGGAAATTGGGGAACTAGAAAACCTCCAAACTTTGACTGTTTTTTTAGTGGGCAAGCGACATGAAGGGTTAAGTATCAAAGAGCTAAGGAAATTCCCAAACCTACAAGGAAAATTTACCATAAAAAACCTTAACAATATCGTTGATGCAAAAGAGGCAGAAGATGCCAACCTGAAAAGCAAAGAGAAAATTGAGGAGTTAGAGCTGATATGGGAAAAAAAAAGTGAAGATTCACTAAAAGTGAAAATTGTGCTCGAAATGTTGCAACCACCAATAAACTTGAAGAGCCTAGTCATTGATTTGTATGGAGGGACAAGTTTTCCGAATTGGTTGGGATATTCTTCATTTTCTAACATGGTGTCCATTGACATTCGTAATTGTGAATACTGCACGACACTTCCACCGCTAGGCCAACTACCTTCCCTCAAGAAGCTGAGTATATCGAATTTGGTGTTGTTGGAGACAATTGGTCCAGAGTTCTATTGTATTAAGGAAGGAGAACGTTCCAATTCTACGTTCCAACCATTTCCTTCCCTTGAGCTTATGATATTTCGTGGCATGCCAAATTGGAAGGATTGGATTCCTTTTGAAGGCAGAAATTTTGCATTTCCCCGACTTAGAACTATGATGTTACTTAATTGTCCAGAACTAAGGGGAGATTTTCCTGATCACCTTTCTTGCATGGAAGAAATTGAAATAAGAGGTTGTTATAACCTATTGGAAACACTCCATACTTTGAATTGGCTATCGGCAATCAAAAGAGTAATAATCACATCACTTGTGAGTCCCTTGCAGCATGCAGTTGCTGCTGAAAGTTTCCCAATGTTTATTTCTAAAACAATCACGAGTAGTATTTGTCTTACTCATTTGACACTCTGGAATATTCAATCTCTCACTGCATTTCCCACAAATGGTCTACCCGCTTCATTGCAGTCACTTGATATTCGTGAGTGTAGGAAGTTATCGTTCATGCCTTTCGAAACATTTCAAAATTACACATCACTTGTGAGTCTTTATATGTGTGACAGCTGTGATTCACTTACATCATTTCCACTTGATTGTTTCCCTGCACTCCAAAGACTTGGCATTCATGGTTGTAGGAGTCTGAATTCCATTTTTATTTCAGAAAGTCCTTCACGTCGGCAGTCAACCCTCCAATCACTTCAAATCACATCCCTTGAATCTGAATCACTTAATGTCAATCTTCGGTTGGACACGCTCACCAATCTTGAACGTTTGGATCTGTGCTGTTCTGGAGAGTTGTCATTTCGTGAAGGAGTTTGTCTACCCCCCAAATTACAATCAATTGATGTTTCTTTTCGAGAAACAAAGCCACATGTAAAGGAATGGGGTCTCCAAGACCTAACAGCTCTTTCAAGTTTGTCAATTCGAGAAAGGGGAGAAATGGATAACACCTTGAAGATGGATTCGTTTCTCCCCATCTCCCTTGTGTCTCTCACTGTCTATGGTAATATGTCCTTTGAAGGAAATGGGCTTCGACACCTCTCCTCTCTTGAAGATCTCCGATTTGATCGTTGTCTACATTTCAAGTCATTGCCAGAAAACTGCTTTCCTTCCTCGCTGAAATCACTTGAATTTAGTTTTTGTGACAAACTTGAGTCATTTCCAGAAGACAGCCTCCCTACCTCTCTTAAGCGGCTGACCATCAGACGTTGCCCTCTGCTAGAATCATTACCAGAAGACAGCCTCCCTACCTCTCTTAAGCGGCTGACCATCAGAGATTGCCCTGTGCTAGAAGAAAGGTATAAAAGGAAGGAAAATTGGTCCAAAATAGCTCACATCCCTGTCATAGAAATAAATGACCAACTCACAATATGA 3855 0.3922 MAATATMIGGAFLSASVQTLVEKLASTEFLDYIRNTKLDVSLLRKLQTTLLTLQAVLDDAEERQINNLAVKKWLDDLKDVVLDAEDLVGEISYDSLRCKMDNTKAGNKTNKVWNFLSSPFKNFYRDINSQLKIMCETLEPFAQHKDTLGLQTKSARVSRRPPSSSGVNESVMVGRNDDKDTIINMLLSDCGSSKNNNLGVVAILGMGGVGKTTLAQLVYNNEKVKQHFDFKVWVCVSEDFDVMRVTKSLLESVVRNTTSVASKVWESDNLDILRVELNKITRKKRFLFVLDDLWNDSYNDWDELVSPLVDGNPGSAVIITTRQQKVAEMTKTFPIYKLDPLSHEDCWSILSKHALGSDEYRANKNTALEKIGRKIARKCGGLPIAAKTLGGLLRSRVDTMAWTDILNSNVWNLPNDNIMPALHLSYQYLPSHLKRCFAYCSIFPKDYPLDREKLVLLWMAEGFLDYSDEGKLPEEVGDGCFAELLSRSLIQQSNDGARGKLFVMHDLINDLATSVSRKICSRFECGDIPEKVRYLSYIQENYDIPMKFRPFYKYKCLRSFLPINPRLTFNHLSIMVVEDLLPQFKRLRVLSLSKYRNITKIPYSIGNLVQLHYLDLSNTEIKSLPETICNLYNLQTLNLLGCYSLTELPVHMGNLISLRHLDIRGTAIKELPMEIGELENLQTLTVFLVGKRHEGLSIKELRKFPNLQGKFTIKNLNNIVDAKEAEDANLKSKEKIEELELIWEKKSEDSLKVKIVLEMLQPPINLKSLVIDLYGGTSFPNWLGYSSFSNMVSIDIRNCEYCTTLPPLGQLPSLKKLSISNLVLLETIGPEFYCIKEGERSNSTFQPFPSLELMIFRGMPNWKDWIPFEGRNFAFPRLRTMMLLNCPELRGDFPDHLSCMEEIEIRGCYNLLETLHTLNWLSAIKRVIITSLVSPLQHAVAAESFPMFISKTITSSICLTHLTLWNIQSLTAFPTNGLPASLQSLDIRECRKLSFMPFETFQNYTSLVSLYMCDSCDSLTSFPLDCFPALQRLGIHGCRSLNSIFISESPSRRQSTLQSLQITSLESESLNVNLRLDTLTNLERLDLCCSGELSFREGVCLPPKLQSIDVSFRETKPHVKEWGLQDLTALSSLSIRERGEMDNTLKMDSFLPISLVSLTVYGNMSFEGNGLRHLSSLEDLRFDRCLHFKSLPENCFPSSLKSLEFSFCDKLESFPEDSLPTSLKRLTIRRCPLLESLPEDSLPTSLKRLTIRDCPVLEERYKRKENWSKIAHIPVIEINDQLTI 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06747 1284 SMART LRR_typ_2 655 678 IPR003591 -
Vivi3g06747 1284 SMART LRR_typ_2 1174 1198 IPR003591 -
Vivi3g06747 1284 SMART LRR_typ_2 608 631 IPR003591 -
Vivi3g06747 1284 Pfam FNIP Repeat 1189 1228 IPR008615 -
Vivi3g06747 1284 PRINTS Disease resistance protein signature 280 294 - -
Vivi3g06747 1284 PRINTS Disease resistance protein signature 379 393 - -
Vivi3g06747 1284 PRINTS Disease resistance protein signature 629 645 - -
Vivi3g06747 1284 PRINTS Disease resistance protein signature 200 215 - -
Vivi3g06747 1284 Gene3D Ribonuclease Inhibitor 564 937 IPR032675 -
Vivi3g06747 1284 FunFam Probable disease resistance protein At1g61300 155 332 - -
Vivi3g06747 1284 PANTHER DISEASE RESISTANCE PROTEIN RP 43 908 IPR044974 GO:0006952
Vivi3g06747 1284 FunFam Probable disease resistance protein At1g63360 426 514 - -
Vivi3g06747 1284 Gene3D Ribonuclease Inhibitor 1051 1270 IPR032675 -
Vivi3g06747 1284 Gene3D Ribonuclease Inhibitor 940 1050 IPR032675 -
Vivi3g06747 1284 Gene3D - 340 424 IPR042197 -
Vivi3g06747 1284 Gene3D - 162 333 IPR027417 -
Vivi3g06747 1284 MobiDBLite consensus disorder prediction 152 171 - -
Vivi3g06747 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 440 IPR027417 -
Vivi3g06747 1284 Gene3D - 16 133 - -
Vivi3g06747 1284 SUPERFAMILY L domain-like 957 1259 - -
Vivi3g06747 1284 Coils Coil 43 63 - -
Vivi3g06747 1284 Pfam Rx N-terminal domain 12 105 IPR041118 -
Vivi3g06747 1284 Gene3D - 425 514 IPR036388 -
Vivi3g06747 1284 Pfam NB-ARC domain 178 407 IPR002182 GO:0043531
Vivi3g06747 1284 SUPERFAMILY L domain-like 503 927 - -
Vivi3g06747 1284 Coils Coil 713 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06747 Vivi-Chr3 190825984 190830876 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06747 598 764 WRKY Transcription Factor Family AT4G12020 33.333 6.21e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06747 - - tpra:123915821 1635.54