Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06706 ATGGATGAATATCATTGTGATGTAAATCCAAACCACTCTTCTGATCTAAACAATATTTCATCATCATGTCCGGCGGATAGATATTTTATAGCGGAGTTTAATTGCACCAACATGTATGTTTTGAGTGCGAGGAGGTTTAGAACTTCTAACGTGACGCAGAGTCACAATTTTATATACGTAACAAAGGAGGAAATGATTCAAAAAACAACCATCGAGTCTTGGCTTTCTGAGACGGATATACCTCAAGATGCTTATAGGGTTGTAGAGTCGAAGATTTTAGAATGTTTGGAGGATATGGTGAAAACGACGCACAAGAATTCAACGGCTTTGCCTATTCGAGTTGATATTTGCATTCCAAGAGCTACCGAAGATGAGAGTAGTGAAAGTGAGGTTGATGGCGATGATGAAATCGATGAGAGTAGTGAAAGTGATGAAGATATTAGCGATCAAGATCAAGATATTGAGTTTGTTCCTGCGGCAAAGTCGTGTATTGAGAAATTAGAGAAAGTTGAAAAAGAAGGAAAATGTAGTATCTGTTTCGAGGATTTTAATGTTTGTCTTGTTATGCCATGTTCGCATATGTATCATCCGAAATGTATCAGTGATTGGTTGGAGATAGGTCATTCGTGTCCGTTGTGTAGGTTCGAGTTGCCTACTTGA 660 0.3833 MDEYHCDVNPNHSSDLNNISSSCPADRYFIAEFNCTNMYVLSARRFRTSNVTQSHNFIYVTKEEMIQKTTIESWLSETDIPQDAYRVVESKILECLEDMVKTTHKNSTALPIRVDICIPRATEDESSESEVDGDDEIDESSESDEDISDQDQDIEFVPAAKSCIEKLEKVEKEGKCSICFEDFNVCLVMPCSHMYHPKCISDWLEIGHSCPLCRFELPT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06706 219 MobiDBLite consensus disorder prediction 123 151 - -
Vivi3g06706 219 Pfam Ring finger domain 175 214 IPR001841 -
Vivi3g06706 219 MobiDBLite consensus disorder prediction 127 151 - -
Vivi3g06706 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 218 - -
Vivi3g06706 219 SUPERFAMILY RING/U-box 175 217 - -
Vivi3g06706 219 ProSiteProfiles Zinc finger RING-type profile. 176 214 IPR001841 -
Vivi3g06706 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Vivi3g06706 219 SMART ring_2 176 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06706 Vivi-Chr3 189282018 189282677 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06706 158 219 C3H Transcription Factor Family AT5G01980 45.833 4.29e-12 62.8