Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06701 ATGGATGAATATTATTGTAAGGCATATCTAGATATGTCTTCAATAGATGTATTACGCGACAATGATCCGTATCTACATATAGAATTCGATTACACGACTACTCGTGTTTCAAGCGATGAAATGAATTCATCTTTAAGCGATACTATACATTATAACTTTTCATATGTGTCCGAAGATAGAGTGATCCGAAAAGCTACCATTGTATCATGGCTTTCTGAAGTGGGTGTTCCTGAAGATGCTTTTGCATTGGTGGTAGAAGAAATTTCGCAATGTGTTAGTGAGATGGGTAGTGGGATGTATAAGAACTTGAGGGATCTCTTTATTCAAGTTGATTTTTCTGTTACACGTAATTCTAAAGAGTGTGATGAAGATGAAGAGAGCAATTGTTTGGACAAGAATGAAGAGGAAATGAAAGTTGAAGAAGATGAAGATAACCATAATAAAGATGAATGGAGTTATAGATGGGAAGAGGAAGAAATGGAGATTGAAGTACAAGATAATGGGTTGACTCCAACTGATACATGGACTTTTGTTGAAGATGATCACGGTGAAAACGAGTATGGAGATGAATGGGACTCTTATTGGGATGAGGAAATGAGAATAGAAGAAGATAATAGATCGGTTATTGAAGTTGAAGTTGATGATGATTATAGCTTCGATATTGAAGTTGAAAATGATGATGATTATAGCTTCGATATTGAAGTTGAAAATGATGATGATTATAACTTCGATATTGAAGTTGAAAACGAAAATGATGAAGATCAATGGAACTATGGTTGGGAAGAGGTAATCGGAATTGAAGAAGAATATATTAGGTTTGTTCCTGCGGCGCCGTCATGCATTGAAGGATTGAAGATGGTAACAATCGAAGAAGCGGAAAAATGTACTATTTGTCACGAAGATTTTAATGTTGGTGTTTGTATGCCATGTTCGCATATGTTTCATACGAACTGTATTAAGGAATGGTTGAATGTAGGCAACTCTTGCCCTTTATGTAGATTTCAGCTACCTACTAGTAGCACAGATGAATAA 1032 0.3547 MDEYYCKAYLDMSSIDVLRDNDPYLHIEFDYTTTRVSSDEMNSSLSDTIHYNFSYVSEDRVIRKATIVSWLSEVGVPEDAFALVVEEISQCVSEMGSGMYKNLRDLFIQVDFSVTRNSKECDEDEESNCLDKNEEEMKVEEDEDNHNKDEWSYRWEEEEMEIEVQDNGLTPTDTWTFVEDDHGENEYGDEWDSYWDEEMRIEEDNRSVIEVEVDDDYSFDIEVENDDDYSFDIEVENDDDYNFDIEVENENDEDQWNYGWEEVIGIEEEYIRFVPAAPSCIEGLKMVTIEEAEKCTICHEDFNVGVCMPCSHMFHTNCIKEWLNVGNSCPLCRFQLPTSSTDE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06701 343 ProSiteProfiles Zinc finger RING-type profile. 295 333 IPR001841 -
Vivi3g06701 343 SMART ring_2 295 332 IPR001841 -
Vivi3g06701 343 Pfam Ring finger domain 294 333 IPR001841 -
Vivi3g06701 343 SUPERFAMILY RING/U-box 294 338 - -
Vivi3g06701 343 MobiDBLite consensus disorder prediction 119 149 - -
Vivi3g06701 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 342 IPR013083 -
Vivi3g06701 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 163 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06701 Vivi-Chr3 189029200 189030231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06701 275 338 C3H Transcription Factor Family AT5G01980 43.056 1.32e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06701 - - vvo:131659558 702.205