Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06698 ATGGATAATGAGATGATTCCATCTGTTACAAGAACTGTTGAAGGTAATCACGGTGGATATCATTATAGAGATGAATGGTATATGGATATGGAAATCGAGGAATTTGATAACTTGGTTATTGAGATTAATAGTGATGAAGATAATAGATTTATTAGTGATGAAGATAATAGATTTATTATTCAAATTGATAGCGATGAAATTGAAGATGAATGGAACTATGGCTGGGAAGATGGAATAGAGATTGAAGAAAATATTAGGTTTGTTCCTGCGGCTCCGTCATGTATTGAAGGATTGAAGATGGTAAAAGTAGAAGAAGCGGAAACATGTACTATTTGTCTTGAAGATTTTAATGTTGGTGTCTGTATGCCATGTTCACATATGTTTCATATGAATTGTATTCAAGATTGGTTAAATGTAGGCAATTCTTGCCCTTTATGTAGATTTCAGCTACCTACTAGTAGCTCAAATGAATAA 474 0.327 MDNEMIPSVTRTVEGNHGGYHYRDEWYMDMEIEEFDNLVIEINSDEDNRFISDEDNRFIIQIDSDEIEDEWNYGWEDGIEIEENIRFVPAAPSCIEGLKMVKVEEAETCTICLEDFNVGVCMPCSHMFHMNCIQDWLNVGNSCPLCRFQLPTSSSNE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06698 157 ProSiteProfiles Zinc finger RING-type profile. 109 147 IPR001841 -
Vivi3g06698 157 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 58 151 - -
Vivi3g06698 157 SUPERFAMILY RING/U-box 108 152 - -
Vivi3g06698 157 SMART ring_2 109 146 IPR001841 -
Vivi3g06698 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 157 IPR013083 -
Vivi3g06698 157 Pfam Ring finger domain 108 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06698 Vivi-Chr3 188930899 188931372 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06698 89 152 C3H Transcription Factor Family AT5G01980 43.056 1.43e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06698 - - vvo:131659556 336.65