Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi3g06698 | ATGGATAATGAGATGATTCCATCTGTTACAAGAACTGTTGAAGGTAATCACGGTGGATATCATTATAGAGATGAATGGTATATGGATATGGAAATCGAGGAATTTGATAACTTGGTTATTGAGATTAATAGTGATGAAGATAATAGATTTATTAGTGATGAAGATAATAGATTTATTATTCAAATTGATAGCGATGAAATTGAAGATGAATGGAACTATGGCTGGGAAGATGGAATAGAGATTGAAGAAAATATTAGGTTTGTTCCTGCGGCTCCGTCATGTATTGAAGGATTGAAGATGGTAAAAGTAGAAGAAGCGGAAACATGTACTATTTGTCTTGAAGATTTTAATGTTGGTGTCTGTATGCCATGTTCACATATGTTTCATATGAATTGTATTCAAGATTGGTTAAATGTAGGCAATTCTTGCCCTTTATGTAGATTTCAGCTACCTACTAGTAGCTCAAATGAATAA | 474 | 0.327 | MDNEMIPSVTRTVEGNHGGYHYRDEWYMDMEIEEFDNLVIEINSDEDNRFISDEDNRFIIQIDSDEIEDEWNYGWEDGIEIEENIRFVPAAPSCIEGLKMVKVEEAETCTICLEDFNVGVCMPCSHMFHMNCIQDWLNVGNSCPLCRFQLPTSSSNE | 157 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi3g06698 | 157 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 147 | IPR001841 | - | |
Vivi3g06698 | 157 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 58 | 151 | - | - | |
Vivi3g06698 | 157 | SUPERFAMILY | RING/U-box | 108 | 152 | - | - | |
Vivi3g06698 | 157 | SMART | ring_2 | 109 | 146 | IPR001841 | - | |
Vivi3g06698 | 157 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 157 | IPR013083 | - | |
Vivi3g06698 | 157 | Pfam | Ring finger domain | 108 | 147 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi3g06698 | Vivi-Chr3 | 188930899 | 188931372 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi3g06698 | 89 | 152 | C3H Transcription Factor Family | AT5G01980 | 43.056 | 1.43e-13 | 65.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi3g06698 | - | - | vvo:131659556 | 336.65 |