Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06697 ATGAGTAGCACTTCGACGCCAAAACGTAAAAATTCATCATTATCATGTGGGGGTGATGGTGGCAAAAAGCCAAAGCGTAGCCGGTTATTATTACCTATGGAAGAAGCTGATCAAAGAGGTAACGCGGAAGGAGGAGAAGGTACTCCAAAGGAAGGTAGCCGGTCATTATTATCGGGAGATAACGGGGGAGGAGGAGAAGTTGCTCTGAAGAAAGGTCCGTGGACAAGGGAAGAGGATGAAATTTTGGTAGATCATATTAAGAAGTATGGAGAGGGAAAGTGGAAGGCAGTCCAGAAGAATTCAGGACTTGCTCGCGATGGGAAAAGCTGTCGTCTACGATGGTCGAATCACTTGAGGTCAGGACTGAAAAGGGGTGCATTTACTGCTGAAGAAAAACACAAAATCCTTGAGTTCCACTTTCTGAAGGGAAGCAAGTGGACTCAAATGGCTGCATTGTTGCCGGGACGTACCGATAACGAGATAAAGAACTTTTGGAACGCAAGATATAGGAAACGGCAACGAGCAGGCTTACCAATCTATCCTAACGAGATAACATCTAAATATTCGTTTAATGGAAGTCAAGAAAGTGCTGACACATTGGCAAATGAACCCAGCCAGCATGATGAAACAGAAAACTTCAACTTGGATATAACTGACTTGGACCTTAAATATTTCAAATTCCACCCAGATATGTTGCCGTCATATTTTGACACACAAGATTACAAACCAATAAGTGACTTGGTTGGACGGTGCTCAGATTCGTCTCATAATACCTTACCCATGCATAGAGCAGCAGTAGTGCGGCGCAGATATTTGAACAGTAGCAGTAGTGCTGCTGTCCTGGAAGTATTTGATCAGTATGGCAAATATCCTATATTGTCTACTCCATGTGATCCGATTCTTAACACATGCCTTCTTCATGGATATGATAATCCTATAACTGGTTTTCATGCCGCGTCAAATATCTCTTCTTCTGAGCCCATATATGGGTCCATGAGTTTTGAGCTCCCTTCATTCCAAAACTCACAGACTCAACAGTGTACCTGGAGCGGCATGTATGTGCCGCCACTTACCTCATTTGAGTCTGCTGACACGCTGGTTCACGCTCCTCTGATTGAGCCTTGTCCGTCCGTTCCAGTTTCTTCGGATTGCAGTCATTTAATTGATTCATCAGTATACTACAATTCAGATCAAAATTTGCAAGGCGCAAGTATTGATTCATTGCAAGCAAATACTGATAGCACAGCTCCCAATGAAGCAGACATTAGTACACAATGGAATGGAAGCAACTTCTTAAGATGGACCCGCCCCGAAATTGAAACCACTCAGAATTATGATATTTACGGCGGTGCATTTAATGATCAGCTTCCAGCTTATTGTTCTTTTGGCGAAGAAGATAATTTGAATCAGAAAGAGTTGGCGCTTCCAGATGCTGTGCTTGACTCTGGCTGGCATTGA 1458 0.4335 MSSTSTPKRKNSSLSCGGDGGKKPKRSRLLLPMEEADQRGNAEGGEGTPKEGSRSLLSGDNGGGGEVALKKGPWTREEDEILVDHIKKYGEGKWKAVQKNSGLARDGKSCRLRWSNHLRSGLKRGAFTAEEKHKILEFHFLKGSKWTQMAALLPGRTDNEIKNFWNARYRKRQRAGLPIYPNEITSKYSFNGSQESADTLANEPSQHDETENFNLDITDLDLKYFKFHPDMLPSYFDTQDYKPISDLVGRCSDSSHNTLPMHRAAVVRRRYLNSSSSAAVLEVFDQYGKYPILSTPCDPILNTCLLHGYDNPITGFHAASNISSSEPIYGSMSFELPSFQNSQTQQCTWSGMYVPPLTSFESADTLVHAPLIEPCPSVPVSSDCSHLIDSSVYYNSDQNLQGASIDSLQANTDSTAPNEADISTQWNGSNFLRWTRPEIETTQNYDIYGGAFNDQLPAYCSFGEEDNLNQKELALPDAVLDSGWH 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06697 485 Pfam Myb-like DNA-binding domain 74 134 - -
Vivi3g06697 485 ProSiteProfiles Myb-like domain profile. 66 118 IPR001005 -
Vivi3g06697 485 SMART sant 123 171 IPR001005 -
Vivi3g06697 485 SMART sant 70 120 IPR001005 -
Vivi3g06697 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 173 IPR017930 -
Vivi3g06697 485 MobiDBLite consensus disorder prediction 1 71 - -
Vivi3g06697 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 122 IPR017930 -
Vivi3g06697 485 FunFam MYB-related transcription factor 70 123 - -
Vivi3g06697 485 SUPERFAMILY Homeodomain-like 69 165 IPR009057 -
Vivi3g06697 485 Gene3D - 68 124 - -
Vivi3g06697 485 ProSiteProfiles Myb-like domain profile. 119 169 IPR001005 -
Vivi3g06697 485 Gene3D - 125 196 - -
Vivi3g06697 485 CDD SANT 73 118 IPR001005 -
Vivi3g06697 485 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 49 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06697 Vivi-Chr3 188910849 188912716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06697 68 370 MYB Transcription Factor Family AT5G06100 37.195 4.14e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g06697 Myb_DNA-bind_6 7.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06697 K09422 - psat:127085601 611.298